Rh4BG329200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000328
Physical Location & Seq
Forward (+)
49497921 .. 49502764
4844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG329200.1

Sequence Viewer

Length: 309 bp
ATGATCAAAGAACTACACATTTGGAAAATAGGCTCCCCTTTTGTCTGCTCATTGACAAGACTGAGCGTTATTTCACCAAGATCAGAAGGAGAAATAGAGTCAAAAGACCCACTGACTTCAATATCCTCATCCGGGAAAGAAGAGAAGTACAGACCAGTGGAGAGGCGAACTGAGGAAGTCAGGAAGAGGAACGCTGTCGGCTACTCTCTGACGATGGTAGTATTGGAAGGGAGCAGTGGAACAATTTGGTTGGGGATTTTATCTCTTCAAGTCTTCATCTTGGACATGAGGATCGAGGGCATCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

7.88

Isoelectric Point (pI)

67.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 299
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 2 cut(s) 120, 269
AlwI GGATC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 265
BccI CCATC 1 cut(s) 208
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 128, 300
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 53, 162
BseNI ACTGG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 132
Bsp143I GATC 3 cut(s) 3, 80, 291
BspCNI CTCAG 2 cut(s) 54, 163
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 155
BssMI GATC 3 cut(s) 3, 80, 291
Bst6I CTCTTC 3 cut(s) 135, 179, 270
BstDEI CTNAG 2 cut(s) 62, 171
BstF5I GGATG 2 cut(s) 128, 300
BstKTI GATC 3 cut(s) 6, 83, 294
BstMBI GATC 3 cut(s) 3, 80, 291
BstSCI CCNGG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 128, 300
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 3 cut(s) 110, 162, 241
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 286
CviJI RGCY 2 cut(s) 33, 201
CviKI_1 RGCY 2 cut(s) 33, 201
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 62, 171
DpnI GATC 3 cut(s) 5, 82, 293
DpnII GATC 3 cut(s) 3, 80, 291
Eam1104I CTCTTC 3 cut(s) 135, 179, 270
EarI CTCTTC 3 cut(s) 135, 179, 270
FaeI CATG 1 cut(s) 289
FaiI YATR 1 cut(s) 287
FatI CATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 115, 287
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 85, 210
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 80, 221
HpyF3I CTNAG 2 cut(s) 62, 171
Hsp92II CATG 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 80, 291
LmnI GCTCC 2 cut(s) 38, 231
LpnPI CCDG 3 cut(s) 145, 166, 168
MalI GATC 3 cut(s) 5, 82, 293
MboI GATC 3 cut(s) 3, 80, 291
MboII GAAGA 4 cut(s) 152, 196, 257, 265
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 6 cut(s) 136, 156, 166, 180, 282, 289
MseI TTAA 1 cut(s) 307
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 133
NciI CCSGG 1 cut(s) 133
NdeII GATC 3 cut(s) 3, 80, 291
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 131
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 34
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 307
Sau3AI GATC 3 cut(s) 3, 80, 291
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 133
SgeI CNNG 9 cut(s) 69, 90, 144, 145, 167, 193, 281, 292, 298
Sse9I AATT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 243
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TscAI CASTG 3 cut(s) 117, 162, 241
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 3 cut(s) 117, 162, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.