Rh6BG041000

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000328
Physical Location & Seq
Forward (+)
6713793 .. 6716076
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG041000.1

Sequence Viewer

Length: 282 bp
ATGGCCAAGAAAGGTCTTTTGCTATGGATTTCTGTGTGCTTAGCTTTGCTAATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTCAGCTTCAGAAGCAAGTCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTCATCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGGTGGAGCTGGGAGCAGCACAGCAGGTCAAGAAGTCATGCCTGATGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

9.62

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 4 cut(s) 70, 76, 185, 194
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 4 cut(s) 44, 79, 90, 238
AluI AGCT 4 cut(s) 44, 79, 90, 238
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 2 cut(s) 3, 205
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 136
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 257
BfaI CTAG 2 cut(s) 131, 280
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 1 cut(s) 246
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 2 cut(s) 5, 207
BsiHKAI GWGCWC 1 cut(s) 81
BsnI GGCC 2 cut(s) 5, 207
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 5, 207
BspMI ACCTGC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 86, 143
BstDEI CTNAG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 5, 207
BveI ACCTGC 1 cut(s) 244
CviAII CATG 1 cut(s) 267
CviJI RGCY 7 cut(s) 5, 44, 79, 90, 130, 207, 238
CviKI_1 RGCY 7 cut(s) 5, 44, 79, 90, 130, 207, 238
DdeI CTNAG 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 86, 143
EarI CTCTTC 2 cut(s) 86, 143
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 4 cut(s) 70, 76, 185, 194
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 1 cut(s) 270
FaiI YATR 6 cut(s) 25, 110, 119, 223, 225, 268
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 131, 280
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 5, 207
Hin1II CATG 1 cut(s) 270
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 95, 106, 174
Hpy188III TCNNGA 2 cut(s) 199, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 235, 242
LpnPI CCDG 2 cut(s) 224, 239
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 131, 280
MboII GAAGA 8 cut(s) 68, 71, 73, 76, 157, 160, 185, 187
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 51
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 120, 144, 221
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 216
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 96
NlaIII CATG 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 141, 216
SatI GCNGC 1 cut(s) 246
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 16, 46, 81, 92, 126, 240, 258
SfaNI GCATC 1 cut(s) 264
SgeI CNNG 8 cut(s) 19, 112, 143, 211, 221, 251, 266, 271
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 51
SspMI CTAG 2 cut(s) 131, 280
SstI GAGCTC 1 cut(s) 81
TasI AATT 1 cut(s) 51
Tru1I TTAA 2 cut(s) 141, 216
Tru9I TTAA 2 cut(s) 141, 216
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 78
VspI ATTAAT 1 cut(s) 216
XspI CTAG 2 cut(s) 131, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.