RLG00000030662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000328
Physical Location & Seq
Reverse (-)
65312670 .. 65313707
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030662

Sequence Viewer

Length: 489 bp
ATGGCGAAGGAAGTGCTCCTGTCTAGCGTCTCAAAACGTCGGTGTCTTTCTTCTTCGCTCCAGAGAGTTGATCTGTTTTTAGGATTTTGTGGGTGTTCAGAAAGCGGAGAGTTCAGTGAAAGAGCCCGGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGAAGAAAAGAAAACAGGAGAAGATGAGAAGAAGGGTGAAAGGTCTGGTGCTTCGTGCTCAAGCTCGGATCTTCCTTGCATGGATAAGCTCAGGGATCAGCTTTCTTGAGAGTGATTGGATCGACCAGTTAAGGAATATGATGGCTGACGGCGGAGAGGGATCTGGTGGAGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGAGGTGGGCAGTGGAGGAGGAGAAGAAGAAGGAGGAGGCAGAGGTCAAGGCCAAGGTGGTGGAGGAGAAGAAGGACAAGGAGGAGGAGAAGAGTGGAAAGAGAGGTATGGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.6

Weight (kDa)

5.28

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 105, 318, 348
AclWI GGATC 4 cut(s) 242, 269, 293, 334
AgsI TTSAA 2 cut(s) 134, 344
AluBI AGCT 3 cut(s) 230, 255, 267
AluI AGCT 3 cut(s) 230, 255, 267
Alw21I GWGCWC 2 cut(s) 18, 226
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 4 cut(s) 242, 269, 293, 334
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 214, 362
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 18, 226
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 210, 293
BpuMI CCSGG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 139, 292
BseDI CCNNGG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 139, 292
BseRI GAGGAG 6 cut(s) 402, 405, 420, 450, 468, 471
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 423
BsiHKAI GWGCWC 2 cut(s) 18, 226
BsiSI CCGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 18, 127, 226
Bsp143I GATC 6 cut(s) 70, 234, 261, 285, 326, 482
BspACI CCGC 3 cut(s) 105, 318, 348
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 485
BspPI GGATC 4 cut(s) 242, 269, 293, 334
BsrI ACTGG 2 cut(s) 139, 292
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 6 cut(s) 70, 234, 261, 285, 326, 482
BssT1I CCWWGG 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 366, 456
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 6 cut(s) 73, 237, 264, 288, 329, 485
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 6 cut(s) 70, 234, 261, 285, 326, 482
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 234, 326
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 2 cut(s) 234, 326
BsuRI GGCC 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 121, 146, 388
CaiI CAGNNNCTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 485
CseI GACGC 1 cut(s) 16
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 2 cut(s) 246, 486
CviJI RGCY 7 cut(s) 125, 145, 230, 255, 267, 311, 423
CviKI_1 RGCY 7 cut(s) 125, 145, 230, 255, 267, 311, 423
DdeI CTNAG 1 cut(s) 256
DpnI GATC 6 cut(s) 72, 236, 263, 287, 328, 484
DpnII GATC 6 cut(s) 70, 234, 261, 285, 326, 482
Eam1104I CTCTTC 2 cut(s) 366, 456
EarI CTCTTC 2 cut(s) 366, 456
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 249, 489
FaiI YATR 4 cut(s) 247, 305, 480, 487
FatI CATG 2 cut(s) 245, 485
Fnu4HI GCNGC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 249, 489
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 214, 362
Hpy188I TCNGA 2 cut(s) 100, 234
Hpy188III TCNNGA 4 cut(s) 61, 151, 272, 486
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 4 cut(s) 192, 353, 395, 437
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 2 cut(s) 249, 489
Kzo9I GATC 6 cut(s) 70, 234, 261, 285, 326, 482
LmnI GCTCC 2 cut(s) 21, 63
LpnPI CCDG 9 cut(s) 32, 74, 140, 152, 167, 197, 243, 305, 315
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 37
MalI GATC 6 cut(s) 72, 236, 263, 287, 328, 484
MboI GATC 6 cut(s) 70, 234, 261, 285, 326, 482
MflI RGATCY 2 cut(s) 234, 326
MhlI GDGCHC 3 cut(s) 18, 127, 226
MseI TTAA 1 cut(s) 296
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 127
NciI CCSGG 1 cut(s) 127
NdeII GATC 6 cut(s) 70, 234, 261, 285, 326, 482
NlaIII CATG 2 cut(s) 249, 489
PagI TCATGA 1 cut(s) 485
PkrI GCNGC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 234, 326
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 6 cut(s) 70, 234, 261, 285, 326, 482
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 3 cut(s) 18, 127, 226
SmlI CTYRAG 2 cut(s) 225, 272
SmoI CTYRAG 2 cut(s) 225, 272
SsiI CCGC 3 cut(s) 105, 318, 348
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 424
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 288
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 3 cut(s) 121, 146, 388
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 3 cut(s) 121, 146, 388
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.