Rh5CG041800

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000328
Physical Location & Seq
Reverse (-)
2876175 .. 2879355
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG041800.1

Sequence Viewer

Length: 531 bp
ATGCTACAAACTGGGGGAGGTGGTGGAGATATTGGAAAGAAGATAAATCATGGAGGTGGTGAGGGAGGTGACGATGATGGCGATGATGATGATTATTTTGATGACTTTGATGACGGTGATGAGGGGGATGAGGGTGGCCTTTTTAGAAAACGCATGTTTCTTGAAGAGCTGTTTGATCGCAAATTTGTAGATGCAGTTTTGAACGAGTGGCAAAAGACAATGATGGATTTACCTGCAGGCTTTCGGCAAGCTTATGAAATGGGATTGGTCAGCTCCGCTCAAATGGTAAGATTCTTAGCAACCAATGCCAGACCAACCACTATTAGGTTCATTTCTCGTTCACTTCCTGATGGGGTATCAAGGGCATTCATTGGCAGCGAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGTTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

176

Amino Acids

19.36

Weight (kDa)

5.24

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 278
AciI CCGC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 473
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 3 cut(s) 164, 202, 445
AluBI AGCT 3 cut(s) 169, 251, 273
AluI AGCT 3 cut(s) 169, 251, 273
AoxI GGCC 2 cut(s) 136, 484
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 182
AseI ATTAAT 1 cut(s) 495
AsuHPI GGTGA 4 cut(s) 71, 80, 128, 415
BbvI GCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 71, 217, 344
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 461
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 387
BshFI GGCC 2 cut(s) 138, 486
BslI CCNNNNNNNGG 1 cut(s) 324
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 138, 486
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 276
BspANI GGCC 2 cut(s) 138, 486
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 159, 422
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 238, 249
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 387
BsuRI GGCC 2 cut(s) 138, 486
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 238, 249
CviAII CATG 3 cut(s) 50, 154, 520
CviJI RGCY 8 cut(s) 138, 169, 240, 251, 273, 409, 486, 524
CviKI_1 RGCY 8 cut(s) 138, 169, 240, 251, 273, 409, 486, 524
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 159, 422
EarI CTCTTC 2 cut(s) 159, 422
Eco57I CTGAAG 1 cut(s) 473
FaeI CATG 3 cut(s) 53, 157, 523
FaiI YATR 8 cut(s) 51, 155, 255, 389, 398, 502, 504, 521
FatI CATG 3 cut(s) 49, 153, 519
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 376
HaeIII GGCC 2 cut(s) 138, 486
Hin1II CATG 3 cut(s) 53, 157, 523
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 2 cut(s) 291, 380
HphI GGTGA 4 cut(s) 71, 80, 128, 415
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 385, 453
Hpy188III TCNNGA 3 cut(s) 161, 347, 478
Hpy8I GTNNAC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 194, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 3 cut(s) 53, 157, 523
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 4 cut(s) 222, 246, 322, 360
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 278
MboI GATC 1 cut(s) 175
MboII GAAGA 6 cut(s) 52, 176, 436, 439, 464, 466
MluCI AATT 1 cut(s) 182
MnlI CCTC 9 cut(s) 11, 47, 55, 59, 115, 124, 399, 423, 500
MseI TTAA 3 cut(s) 420, 495, 512
MslI CAYNNNNRTG 2 cut(s) 54, 401
Mva1269I GAATGC 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 175
NlaIII CATG 3 cut(s) 53, 157, 523
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 291, 380
PkrI GCNGC 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 495
PstI CTGCAG 1 cut(s) 238
RseI CAYNNNNRTG 2 cut(s) 54, 401
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 420, 495, 512
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 175
SbfI CCTGCAGG 1 cut(s) 238
SdaI CCTGCAGG 1 cut(s) 238
SetI ASST 9 cut(s) 22, 58, 70, 171, 235, 253, 275, 329, 405
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 54, 401
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse8387I CCTGCAGG 1 cut(s) 238
Sse9I AATT 1 cut(s) 182
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 116
TasI AATT 1 cut(s) 182
TfiI GAWTC 2 cut(s) 291, 380
Tru1I TTAA 3 cut(s) 420, 495, 512
Tru9I TTAA 3 cut(s) 420, 495, 512
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 270, 319, 358, 508
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 157
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.