Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009313.1

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Forward (+)

37670 .. 39605

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009313.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgttccgtcccatattcaaatcgacggcggccatggctgttgggatgaagagtcgatctgtttttaggtccaacgctagtgggaacaactgcatgttccgtcccagattcaaatcgacgacggccatggctgttgggatgaagagtcgatctgtttttaggtccaacgctccacccaccaattcatcaagaaggtacagaccattttgggcagaaagcagagagttccgtgaaagagcccggtttcaatcccagtggctgctcttgaccttgataatgaagaagaaaagaaaacaggagaagatgagaagaagggtgaaaggtctggtgcttcgtgctcaagctcggatcttccttgcatggataagctcagggatcagctttcttgagagaagggtgaaaggtttggtgcttcgtgctcaagctcggatcttccttgcatggataagctcagggatcagctttcttgagagggatctggtggcgatattcaaggcggtgagggagaaggagaggaagaagaggtgggcggtggaggaggaggagaagaagaagaagaaggaggcggaggtcaaggctaaggaggaggccaaggtggtggaggagaagaaggaggaggaggaggaggaggaggaggaggagaagagtggaaagagagttccaaacaaagggagggggcttgatatggagaaatactcatggacccagagtctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

238

Amino Acids

28.01

Weight (kDa)

10.61

Isoelectric Point (pI)

67.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	29, 497, 530, 566
AclWI	GGATC	5 cut(s)	356, 383, 437, 464, 483
AcoI	YGGCCR	2 cut(s)	30, 123
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	19, 112, 248, 493
AhdI	GACNNNNNGTC	1 cut(s)	708
AloI	GAACNNNNNNTCC	2 cut(s)	642, 674
AluBI	AGCT	6 cut(s)	344, 369, 381, 425, 450, 462
AluI	AGCT	6 cut(s)	344, 369, 381, 425, 450, 462
Alw21I	GWGCWC	2 cut(s)	340, 421
AlwI	GGATC	5 cut(s)	356, 383, 437, 464, 483
AlwNI	CAGNNNCTG	2 cut(s)	259, 712
AoxI	GGCC	3 cut(s)	30, 123, 588
ApeKI	GCWGC	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	69, 162, 702
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	328, 409, 511
AvaII	GGWCC	3 cut(s)	69, 162, 702
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	340, 421
BbvI	GCAGC	1 cut(s)	246
BceAI	ACGGC	2 cut(s)	42, 138
BcnI	CCSGG	1 cut(s)	241
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	713
BisI	GCNGC	2 cut(s)	30, 260
BlsI	GCNGC	2 cut(s)	31, 261
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	3 cut(s)	69, 162, 702
BmeRI	GACNNNNNGTC	1 cut(s)	708
BmgT120I	GGNCC	3 cut(s)	69, 162, 702
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
Bpu10I	CCTNAGC	3 cut(s)	370, 451, 579
BpuEI	CTTGAG	4 cut(s)	324, 405, 407, 488
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	33, 126, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	33, 126, 591
BseGI	GGATG	2 cut(s)	51, 144
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	384, 465
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	246
BshFI	GGCC	3 cut(s)	32, 125, 590
BsiHKAI	GWGCWC	2 cut(s)	340, 421
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	32, 125, 590
Bsp1286I	GDGCHC	3 cut(s)	241, 340, 421
Bsp143I	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
Bsp19I	CCATGG	2 cut(s)	33, 126
BspACI	CCGC	4 cut(s)	29, 497, 530, 566
BspANI	GGCC	3 cut(s)	32, 125, 590
BspCNI	CTCAG	2 cut(s)	383, 464
BspLI	GGNNCC	1 cut(s)	704
BspPI	GGATC	5 cut(s)	356, 383, 437, 464, 483
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	33, 126, 591
BssMI	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
BssT1I	CCWWGG	3 cut(s)	33, 126, 591
Bst6I	CTCTTC	4 cut(s)	44, 137, 515, 638
BstDEI	CTNAG	3 cut(s)	370, 451, 579
BstDSI	CCRYGG	2 cut(s)	33, 126
BstF5I	GGATG	2 cut(s)	51, 144
BstKTI	GATC	7 cut(s)	59, 152, 351, 378, 432, 459, 478
BstMBI	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	713
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	3 cut(s)	348, 429, 475
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	3 cut(s)	348, 429, 475
BsuRI	GGCC	3 cut(s)	32, 125, 590
BtgI	CCRYGG	2 cut(s)	33, 126
BtsCI	GGATG	2 cut(s)	51, 144
BtsIMutI	CAGTG	1 cut(s)	260
CaiI	CAGNNNCTG	2 cut(s)	259, 712
Cfr13I	GGNCC	3 cut(s)	69, 162, 702
Csp6I	GTAC	1 cut(s)	196
CspCI	CAANNNNNGTGG	4 cut(s)	61, 96, 236, 271
CviAII	CATG	6 cut(s)	34, 94, 127, 360, 441, 699
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	370, 451, 579
DpnI	GATC	7 cut(s)	58, 151, 350, 377, 431, 458, 477
DpnII	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
DriI	GACNNNNNGTC	1 cut(s)	708
EaeI	YGGCCR	2 cut(s)	30, 123
Eam1104I	CTCTTC	4 cut(s)	44, 137, 515, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	708
EarI	CTCTTC	4 cut(s)	44, 137, 515, 638
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	3 cut(s)	33, 126, 591
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	3 cut(s)	69, 162, 702
EcoT14I	CCWWGG	3 cut(s)	33, 126, 591
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	3 cut(s)	33, 126, 591
FaeI	CATG	6 cut(s)	37, 97, 130, 363, 444, 702
FaiI	YATR	8 cut(s)	14, 35, 95, 128, 361, 442, 686, 700
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	6 cut(s)	33, 93, 126, 359, 440, 698
Fnu4HI	GCNGC	2 cut(s)	30, 260
FokI	GGATG	2 cut(s)	58, 151
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	30, 260
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	2 cut(s)	30, 260
HaeIII	GGCC	3 cut(s)	32, 125, 590
HapII	CCGG	1 cut(s)	241
Hin1II	CATG	6 cut(s)	37, 97, 130, 363, 444, 702
HinfI	GANTC	4 cut(s)	52, 108, 145, 709
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	3 cut(s)	328, 409, 511
Hpy188I	TCNGA	2 cut(s)	348, 429
Hpy188III	TCNNGA	4 cut(s)	189, 265, 386, 467
Hpy99I	CGWCG	3 cut(s)	28, 121, 124
HpyAV	CCTTC	6 cut(s)	186, 306, 387, 502, 553, 604
HpyCH4V	TGCA	3 cut(s)	93, 359, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	370, 451, 579
Hsp92II	CATG	6 cut(s)	37, 97, 130, 363, 444, 702
Kzo9I	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	118, 254, 266, 281, 311, 357, 438, 464
Lsp1109I	GCAGC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	78
MalI	GATC	7 cut(s)	58, 151, 350, 377, 431, 458, 477
MboI	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
MflI	RGATCY	3 cut(s)	348, 429, 475
MhlI	GDGCHC	3 cut(s)	241, 340, 421
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	61, 154
MmeI	TCCRAC	2 cut(s)	96, 189
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	2 cut(s)	33, 126
NdeII	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
NlaIII	CATG	6 cut(s)	37, 97, 130, 363, 444, 702
NlaIV	GGNNCC	1 cut(s)	704
NspI	RCATGY	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	31, 261
PleI	GAGTC	2 cut(s)	60, 153
PpsI	GAGTC	2 cut(s)	60, 153
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	3 cut(s)	69, 162, 702
PstNI	CAGNNNCTG	2 cut(s)	259, 712
PsuI	RGATCY	3 cut(s)	348, 429, 475
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	2 cut(s)	30, 260
Sau3AI	GATC	7 cut(s)	56, 149, 348, 375, 429, 456, 475
Sau96I	GGNCC	3 cut(s)	69, 162, 702
SchI	GAGTC	2 cut(s)	61, 154
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	3 cut(s)	241, 340, 421
SfcI	CTRYAG	1 cut(s)	713
SinI	GGWCC	3 cut(s)	69, 162, 702
SmlI	CTYRAG	4 cut(s)	339, 386, 420, 467
SmoI	CTYRAG	4 cut(s)	339, 386, 420, 467
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	29, 497, 530, 566
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	3 cut(s)	33, 126, 591
TaqI	TCGA	4 cut(s)	23, 55, 116, 148
TasI	AATT	1 cut(s)	181
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	62, 155, 174, 293
TspGWI	ACGGA	2 cut(s)	89, 218
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	3 cut(s)	69, 162, 702
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.