DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 315 |
| AccBSI | CCGCTC | 1 cut(s) | 277 |
| AciI | CCGC | 1 cut(s) | 277 |
| AcoI | YGGCCR | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 208 |
| AgsI | TTSAA | 2 cut(s) | 107, 347 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 327, 359 |
| AluBI | AGCT | 2 cut(s) | 23, 268 |
| AluI | AGCT | 2 cut(s) | 23, 268 |
| AoxI | GGCC | 1 cut(s) | 154 |
| ApeKI | GCWGC | 1 cut(s) | 23 |
| ApoI | RAATTY | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 1 cut(s) | 236 |
| BalI | TGGCCA | 1 cut(s) | 156 |
| BbvI | GCAGC | 1 cut(s) | 10 |
| BccI | CCATC | 2 cut(s) | 202, 302 |
| BfuAI | ACCTGC | 1 cut(s) | 315 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| BmsI | GCATC | 2 cut(s) | 43, 88 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 259 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 208 |
| BseGI | GGATG | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 208 |
| BseRI | GAGGAG | 2 cut(s) | 74, 77 |
| BseXI | GCAGC | 1 cut(s) | 10 |
| BsgI | GTGCAG | 1 cut(s) | 9 |
| BshFI | GGCC | 1 cut(s) | 156 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 208 |
| BsmI | GAATGC | 1 cut(s) | 202 |
| BsnI | GGCC | 1 cut(s) | 156 |
| Bsp143I | GATC | 1 cut(s) | 85 |
| BspACI | CCGC | 1 cut(s) | 277 |
| BspANI | GGCC | 1 cut(s) | 156 |
| BspMI | ACCTGC | 1 cut(s) | 315 |
| BsrBI | CCGCTC | 1 cut(s) | 277 |
| BssMI | GATC | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 1 cut(s) | 129 |
| Bst6I | CTCTTC | 1 cut(s) | 313 |
| BstF5I | GGATG | 1 cut(s) | 189 |
| BstKTI | GATC | 1 cut(s) | 88 |
| BstMBI | GATC | 1 cut(s) | 85 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 274 |
| BstV1I | GCAGC | 1 cut(s) | 10 |
| BsuRI | GGCC | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 189 |
| BveI | ACCTGC | 1 cut(s) | 315 |
| CviAII | CATG | 1 cut(s) | 193 |
| CviJI | RGCY | 3 cut(s) | 23, 156, 268 |
| CviKI_1 | RGCY | 3 cut(s) | 23, 156, 268 |
| DpnI | GATC | 1 cut(s) | 87 |
| DpnII | GATC | 1 cut(s) | 85 |
| EaeI | YGGCCR | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 1 cut(s) | 313 |
| EarI | CTCTTC | 1 cut(s) | 313 |
| FaeI | CATG | 1 cut(s) | 196 |
| FaiI | YATR | 6 cut(s) | 71, 132, 140, 194, 246, 260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 272, 304 |
| FatI | CATG | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 196 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| GluI | GCNGC | 1 cut(s) | 24 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HaeIII | GGCC | 1 cut(s) | 156 |
| Hin1II | CATG | 1 cut(s) | 196 |
| HphI | GGTGA | 1 cut(s) | 236 |
| Hpy188I | TCNGA | 1 cut(s) | 16 |
| Hpy188III | TCNNGA | 2 cut(s) | 272, 365 |
| HpyCH4III | ACNGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 2 cut(s) | 26, 56 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 274 |
| Hsp92II | CATG | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 85 |
| LpnPI | CCDG | 6 cut(s) | 33, 78, 202, 216, 320, 324 |
| Lsp1109I | GCAGC | 1 cut(s) | 10 |
| LweI | GCATC | 2 cut(s) | 43, 88 |
| MalI | GATC | 1 cut(s) | 87 |
| MbiI | CCGCTC | 1 cut(s) | 277 |
| MboI | GATC | 1 cut(s) | 85 |
| MboII | GAAGA | 4 cut(s) | 62, 134, 292, 330 |
| MlsI | TGGCCA | 1 cut(s) | 156 |
| MluCI | AATT | 3 cut(s) | 135, 175, 369 |
| MluNI | TGGCCA | 1 cut(s) | 156 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 5 cut(s) | 52, 55, 58, 214, 234 |
| Mox20I | TGGCCA | 1 cut(s) | 156 |
| MscI | TGGCCA | 1 cut(s) | 156 |
| MseI | TTAA | 1 cut(s) | 42 |
| Msp20I | TGGCCA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 1 cut(s) | 23 |
| Mva1269I | GAATGC | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 274 |
| NdeII | GATC | 1 cut(s) | 85 |
| NlaIII | CATG | 1 cut(s) | 196 |
| PctI | GAATGC | 1 cut(s) | 202 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PvuII | CAGCTG | 1 cut(s) | 23 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 1 cut(s) | 85 |
| SetI | ASST | 4 cut(s) | 25, 245, 270, 309 |
| SfaNI | GCATC | 2 cut(s) | 43, 88 |
| SmlI | CTYRAG | 1 cut(s) | 238 |
| SmoI | CTYRAG | 1 cut(s) | 238 |
| Sse9I | AATT | 3 cut(s) | 135, 175, 369 |
| SsiI | CCGC | 1 cut(s) | 277 |
| TaaI | ACNGT | 1 cut(s) | 129 |
| TasI | AATT | 3 cut(s) | 135, 175, 369 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TseI | GCWGC | 1 cut(s) | 23 |
| TspDTI | ATGAA | 4 cut(s) | 147, 209, 275, 330 |
| XapI | RAATTY | 1 cut(s) | 369 |