Rroxscaffold_2G00109880

galactinol--sucrose galactosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
34123383 .. 34128166
4784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109880.1

Sequence Viewer

Length: 1170 bp
ATGACTGTCACTCCAAACACTTCCATCAACGATGGAAACCCGGTGGTTCACGGAAAGACCATATTGACCGGAGTGCCGGAAAACATGGTGCTCACTCCAGGCTCCGGTGTCAGCCTCGTAGCTGGTGCTTTCATTGGCGCCACAGCCTCTCACAGCAAAAGCCTCCATATCTTCCCCGTCGGTGTTTTAGCAGGTCAGCTGTTCATGTGCCTTGTCCGGTTTAAGCTTTGGTGGATGACGCAGAGGAGGGGGTCATGTGGGAAAGAAGTTCCGCTGGAGACCCAATTCATGCTTGTGGAGACCAAAGATGATGGTGAAAGAAGTGATGAATCCTCTATCATATACACAGTTTTCCTTCCTCTGCTGGAGGGCCGGTTCAGTTCGGTTTTGCTAGGGAACGAGCGGAATGAAGTTCCCGATTTAAAGGTGGACCACAACTTCATCTTACTGCGCAAAAAGGTTCTGGACATTAGTGAGGTTCAGACCTATGTGATAAACAGTGTTAGAGTTCTCTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCTCCACATTTGCTTAATCCTACTTCGGCTATTATGTACAGCACCAAAGCAATCCCATGTCAAAGCCTCATCTAATACCTTTTTGTTCCAATTCATGACTTGGGCTGTTGTGGAGCAGAACATTGGTGTGCCTAAAGTTGATGTCTTGAAGCAGAAATTGGAGCTTCTTGGGATTATGTTTGTGATAAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATTTTCGTCATGTAGGATCAGCTGAGAGCCAACGTGGAAACAATTGTCTTCCTTCACTGGGCTCCCACTCAGTCTTATACCTACAGAAATGTTATGTCTCAGACTATTCTGGAGGACATGCAGCAACAGTGAGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACTAGATGAAGCCATTGAGAAGCTGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGACGGTTAAGTTTCATGGCTCATTAG

Protein Analysis

389

Amino Acids

43.39

Weight (kDa)

9.4

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 8 - 138 7.9e-38 Raffinose synthase or seed imbibition protein Sip1
PLATZ PF04640 152 - 197 5.2e-09 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 542
AccBSI CCGCTC 1 cut(s) 403
AciI CCGC 2 cut(s) 272, 403
AclWI GGATC 1 cut(s) 820
AcuI CTGAAG 2 cut(s) 1103, 1112
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 3 cut(s) 104, 542, 854
AgsI TTSAA 2 cut(s) 520, 706
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
AluBI AGCT 7 cut(s) 122, 199, 226, 542, 721, 818, 1030
AluI AGCT 7 cut(s) 122, 199, 226, 542, 721, 818, 1030
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 3 cut(s) 272, 293, 898
AlwI GGATC 1 cut(s) 820
AoxI GGCC 3 cut(s) 370, 527, 1123
ApeKI GCWGC 1 cut(s) 917
AseI ATTAAT 1 cut(s) 1134
AspLEI GCGC 2 cut(s) 140, 453
AspS9I GGNCC 3 cut(s) 370, 430, 979
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 326, 1054
AvaII GGWCC 2 cut(s) 430, 979
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 860
BbsI GAAGAC 2 cut(s) 759, 836
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 929
BccI CCATC 3 cut(s) 26, 32, 305
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 272, 293, 898
BfaI CTAG 3 cut(s) 392, 1010, 1049
BfmI CTRYAG 1 cut(s) 878
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 182
BglII AGATCT 2 cut(s) 929, 990
BisI GCNGC 1 cut(s) 918
BlpI GCTNAGC 1 cut(s) 1031
BlsI GCNGC 1 cut(s) 919
Bme1390I CCNGG 2 cut(s) 41, 99
Bme18I GGWCC 2 cut(s) 430, 979
BmgT120I GGNCC 3 cut(s) 370, 430, 979
BmiI GGNNCC 4 cut(s) 103, 139, 859, 980
BmrFI CCNGG 2 cut(s) 41, 99
BmrI ACTGGG 1 cut(s) 863
BmuI ACTGGG 1 cut(s) 863
BpiI GAAGAC 2 cut(s) 759, 836
BpmI CTGGAG 4 cut(s) 81, 296, 386, 927
Bpu1102I GCTNAGC 1 cut(s) 1031
BpuEI CTTGAG 1 cut(s) 1100
BpuMI CCSGG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 272, 293
BsaWI WCCGGW 3 cut(s) 68, 104, 216
BsaXI ACNNNNNCTCC 3 cut(s) 25, 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 542, 854
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 104, 542, 854
BseMII CTCAG 4 cut(s) 810, 879, 909, 1022
BseNI ACTGG 1 cut(s) 858
BseRI GAGGAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 929
BshFI GGCC 3 cut(s) 372, 529, 1125
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 6 cut(s) 41, 69, 77, 105, 217, 373
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 3 cut(s) 104, 542, 854
BsmAI GTCTC 3 cut(s) 272, 293, 898
BsmFI GGGAC 1 cut(s) 992
BsnI GGCC 3 cut(s) 372, 529, 1125
Bso31I GGTCTC 2 cut(s) 272, 293
Bsp1286I GDGCHC 2 cut(s) 93, 860
Bsp1407I TGTACA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 785, 812, 929, 990
Bsp1720I GCTNAGC 1 cut(s) 1031
BspACI CCGC 2 cut(s) 272, 403
BspANI GGCC 3 cut(s) 372, 529, 1125
BspCNI CTCAG 4 cut(s) 811, 878, 908, 1023
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 4 cut(s) 103, 139, 859, 980
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 820
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 2 cut(s) 272, 293
BsrBI CCGCTC 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 593
BsrI ACTGG 1 cut(s) 858
BssAI RCCGGY 1 cut(s) 372
BssMI GATC 4 cut(s) 785, 812, 929, 990
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 5 cut(s) 7, 349, 500, 925, 1149
Bst6I CTCTTC 2 cut(s) 518, 1061
BstACI GRCGYC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 593
BstDEI CTNAG 4 cut(s) 819, 865, 895, 1031
BstF5I GGATG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 453
BstKTI GATC 4 cut(s) 788, 815, 932, 993
BstMAI GTCTC 3 cut(s) 272, 293, 898
BstMBI GATC 4 cut(s) 785, 812, 929, 990
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 39, 97
BstSFI CTRYAG 1 cut(s) 878
BstV1I GCAGC 1 cut(s) 929
BstV2I GAAGAC 2 cut(s) 759, 836
BstX2I RGATCY 2 cut(s) 929, 990
BstYI RGATCY 2 cut(s) 929, 990
BsuRI GGCC 3 cut(s) 372, 529, 1125
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 505, 851, 930
BveI ACCTGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 651
CfoI GCGC 2 cut(s) 140, 453
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 370, 430, 979
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 594
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 4 cut(s) 819, 865, 895, 1031
DinI GGCGCC 1 cut(s) 139
DpnI GATC 4 cut(s) 787, 814, 931, 992
DpnII GATC 4 cut(s) 785, 812, 929, 990
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 518, 1061
EarI CTCTTC 2 cut(s) 518, 1061
Eco147I AGGCCT 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 2 cut(s) 272, 293
Eco47I GGWCC 2 cut(s) 430, 979
Eco57I CTGAAG 2 cut(s) 1103, 1112
EcoRII CCWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 860
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
FaqI GGGAC 1 cut(s) 992
Fnu4HI GCNGC 1 cut(s) 918
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 1 cut(s) 918
FspBI CTAG 3 cut(s) 392, 1010, 1049
FspI TGCGCA 1 cut(s) 452
GlaI GCGC 2 cut(s) 139, 452
GluI GCNGC 1 cut(s) 918
GsuI CTGGAG 4 cut(s) 81, 296, 386, 927
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 372, 529, 1125
HapII CCGG 6 cut(s) 41, 69, 77, 105, 217, 373
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 140, 453
Hin1I GRCGYC 1 cut(s) 138
Hin6I GCGC 2 cut(s) 138, 451
HinP1I GCGC 2 cut(s) 138, 451
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 329, 546, 555, 960
HpaII CCGG 6 cut(s) 41, 69, 77, 105, 217, 373
HphI GGTGA 2 cut(s) 326, 1054
Hpy166II GTNNAC 2 cut(s) 49, 430
Hpy188I TCNGA 4 cut(s) 483, 785, 898, 1092
Hpy188III TCNNGA 7 cut(s) 416, 464, 517, 652, 703, 906, 1117
Hpy8I GTNNAC 2 cut(s) 49, 430
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 365, 858
HpyCH4III ACNGT 5 cut(s) 7, 349, 500, 925, 1149
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 1 cut(s) 917
HpyF3I CTNAG 4 cut(s) 819, 865, 895, 1031
HpySE526I ACGT 1 cut(s) 829
Hsp92I GRCGYC 1 cut(s) 138
HspAI GCGC 2 cut(s) 138, 451
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 4 cut(s) 785, 812, 929, 990
LmnI GCTCC 5 cut(s) 107, 670, 718, 793, 863
Lsp1109I GCAGC 1 cut(s) 929
MaeI CTAG 3 cut(s) 392, 1010, 1049
MaeII ACGT 1 cut(s) 829
MaeIII GTNAC 2 cut(s) 7, 940
MalI GATC 4 cut(s) 787, 814, 931, 992
MbiI CCGCTC 1 cut(s) 403
MboI GATC 4 cut(s) 785, 812, 929, 990
MboII GAAGA 8 cut(s) 163, 505, 764, 836, 1075, 1078, 1103, 1105
MfeI CAATTG 1 cut(s) 838
MflI RGATCY 2 cut(s) 929, 990
MhlI GDGCHC 2 cut(s) 93, 860
MluCI AATT 4 cut(s) 284, 647, 713, 838
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 564
MseI TTAA 7 cut(s) 222, 422, 572, 951, 1059, 1134, 1151
MslI CAYNNNNRTG 3 cut(s) 293, 683, 1040
MspA1I CMGCKG 3 cut(s) 199, 274, 818
MspI CCGG 6 cut(s) 41, 69, 77, 105, 217, 373
MspR9I CCNGG 2 cut(s) 41, 99
MunI CAATTG 1 cut(s) 838
MvaI CCWGG 1 cut(s) 99
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 1 cut(s) 41
NdeII GATC 4 cut(s) 785, 812, 929, 990
NlaIV GGNNCC 4 cut(s) 103, 139, 859, 980
NmuCI GTSAC 1 cut(s) 7
NsbI TGCGCA 1 cut(s) 452
NspI RCATGY 1 cut(s) 917
PagI TCATGA 1 cut(s) 651
PceI AGGCCT 1 cut(s) 529
PfeI GAWTC 3 cut(s) 329, 546, 960
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 1 cut(s) 919
PleI GAGTC 1 cut(s) 563
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 563
PshBI ATTAAT 1 cut(s) 1134
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 4 cut(s) 103, 139, 859, 980
PspPI GGNCC 3 cut(s) 370, 430, 979
PsuI RGATCY 2 cut(s) 929, 990
PvuII CAGCTG 2 cut(s) 199, 818
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 3 cut(s) 293, 683, 1040
SaqAI TTAA 7 cut(s) 222, 422, 572, 951, 1059, 1134, 1151
SatI GCNGC 1 cut(s) 918
Sau3AI GATC 4 cut(s) 785, 812, 929, 990
Sau96I GGNCC 3 cut(s) 370, 430, 979
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 2 cut(s) 41, 99
SduI GDGCHC 2 cut(s) 93, 860
SfcI CTRYAG 1 cut(s) 878
SfoI GGCGCC 1 cut(s) 139
SinI GGWCC 2 cut(s) 430, 979
SmiMI CAYNNNNRTG 3 cut(s) 293, 683, 1040
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
Sse9I AATT 4 cut(s) 284, 647, 713, 838
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 2 cut(s) 272, 403
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 3 cut(s) 392, 1010, 1049
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 39, 97
TaaI ACNGT 5 cut(s) 7, 349, 500, 925, 1149
TaiI ACGT 1 cut(s) 832
TaqII GACCGA 1 cut(s) 996
TasI AATT 4 cut(s) 284, 647, 713, 838
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 3 cut(s) 329, 546, 960
Tru1I TTAA 7 cut(s) 222, 422, 572, 951, 1059, 1134, 1151
Tru9I TTAA 7 cut(s) 222, 422, 572, 951, 1059, 1134, 1151
TscAI CASTG 3 cut(s) 505, 858, 930
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 505, 858, 930
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 430, 979
VspI ATTAAT 1 cut(s) 1134
XceI RCATGY 1 cut(s) 917
XspI CTAG 3 cut(s) 392, 1010, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.