Rroxscaffold_3G00225910

Glycosyl hydrolase family 3 N terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000328
Physical Location & Seq
Forward (+)
9291867 .. 9301088
9222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225910.1

Sequence Viewer

Length: 369 bp
ATGGCTGAGAAAGTTCCGCCTTTTCAAAATGGTGGTGCTCTCTGGTTTACTAATCCCACAACTCTAGATAGCATGCTGATCCTTCCAATTCTGACAGCAATGACATTCTGGATCATAGTCGAGCAACTCTACTTCAGGGATTCTTTGATTGGAGCTGCAACTGCACTTGAAGTTAAAGCCACAGGCATTCCATATGTCTGTGCACCTTGCATAGCGGTTTGTAGAGATCCAAGATGGGGTCGTTGTTATGAAAGCTACGGTGAAGATCATAAGGTTGTTCAAGCATTGACTCAGATCATACTTGGATTACAAGGAGATATACCACCTAACTCTACAAAGGGAACACCCTTTGTAGCTGGAAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

122

Amino Acids

13.36

Weight (kDa)

5.31

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 50 - 106 1.3e-09 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 215
AclWI GGATC 3 cut(s) 73, 119, 221
AcuI CTGAAG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 26, 170, 281
AluBI AGCT 3 cut(s) 155, 255, 356
AluI AGCT 3 cut(s) 155, 255, 356
Alw21I GWGCWC 2 cut(s) 40, 205
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 3 cut(s) 73, 119, 221
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 40, 205
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 228
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 40, 205
BslI CCNNNNNNNGG 1 cut(s) 236
BsmI GAATGC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 40, 205
Bsp143I GATC 5 cut(s) 78, 111, 226, 265, 294
BspACI CCGC 2 cut(s) 17, 215
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 3 cut(s) 73, 119, 221
BsrDI GCAATG 1 cut(s) 105
BssMI GATC 5 cut(s) 78, 111, 226, 265, 294
Bst4CI ACNGT 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 6, 291
BstKTI GATC 5 cut(s) 81, 114, 229, 268, 297
BstMBI GATC 5 cut(s) 78, 111, 226, 265, 294
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 74
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 5, 155, 179, 255, 356
CviKI_1 RGCY 5 cut(s) 5, 155, 179, 255, 356
DdeI CTNAG 2 cut(s) 6, 291
DpnI GATC 5 cut(s) 80, 113, 228, 267, 296
DpnII GATC 5 cut(s) 78, 111, 226, 265, 294
EciI GGCGGA 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 118
FaeI CATG 1 cut(s) 76
FaiI YATR 9 cut(s) 74, 116, 193, 195, 212, 249, 270, 299, 320
FatI CATG 1 cut(s) 72
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 156
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 140, 289
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 48, 203
Hpy188I TCNGA 2 cut(s) 93, 294
Hpy188III TCNNGA 2 cut(s) 65, 109
Hpy8I GTNNAC 2 cut(s) 48, 203
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 4 cut(s) 158, 164, 203, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 6, 291
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 5 cut(s) 78, 111, 226, 265, 294
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 5 cut(s) 28, 94, 121, 168, 342
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 65
MalI GATC 5 cut(s) 80, 113, 228, 267, 296
MboI GATC 5 cut(s) 78, 111, 226, 265, 294
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 40, 205
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 283
MseI TTAA 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 193
NdeII GATC 5 cut(s) 78, 111, 226, 265, 294
NlaIII CATG 1 cut(s) 76
NspI RCATGY 1 cut(s) 76
PaeI GCATGC 1 cut(s) 76
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 226
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 5 cut(s) 78, 111, 226, 265, 294
SchI GAGTC 1 cut(s) 283
SduI GDGCHC 2 cut(s) 40, 205
SetI ASST 6 cut(s) 157, 208, 257, 276, 328, 358
SphI GCATGC 1 cut(s) 76
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 17, 215
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 264
VneI GTGCAC 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 64
XceI RCATGY 1 cut(s) 76
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.