Rh5AG107300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000328
Physical Location & Seq
Forward (+)
9821300 .. 9824391
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG107300.1

Sequence Viewer

Length: 531 bp
ATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGGCTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCAAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGCTTTCATCTGATCCAAGTATCGTAGATCTTGATATTCCATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAATACTAGCTGCTGTTACATGCTATAGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.72

Weight (kDa)

8.87

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 60 - 95 9.8e-06 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 56
AclWI GGATC 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 482, 491
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 4 cut(s) 74, 277, 341, 377
AluI AGCT 4 cut(s) 74, 277, 341, 377
AlwI GGATC 1 cut(s) 281
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AseI ATTAAT 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 142, 433
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 74
BfaI CTAG 3 cut(s) 63, 374, 428
BfmI CTRYAG 1 cut(s) 391
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 378
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 93, 233
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 93, 233
BseGI GGATG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 36, 264
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 503
BsnI GGCC 1 cut(s) 503
Bsp143I GATC 4 cut(s) 31, 204, 286, 301
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 37, 265
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 93, 233
BssMI GATC 4 cut(s) 31, 204, 286, 301
BssT1I CCWWGG 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 128, 440
BstDEI CTNAG 3 cut(s) 45, 273, 494
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 4 cut(s) 34, 207, 289, 304
BstMBI GATC 4 cut(s) 31, 204, 286, 301
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 12
CciI TCATGA 1 cut(s) 124
CviAII CATG 4 cut(s) 103, 125, 253, 387
DdeI CTNAG 3 cut(s) 45, 273, 494
DpnI GATC 4 cut(s) 33, 206, 288, 303
DpnII GATC 4 cut(s) 31, 204, 286, 301
Eam1104I CTCTTC 2 cut(s) 128, 440
EarI CTCTTC 2 cut(s) 128, 440
Eco130I CCWWGG 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 482, 491
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 4 cut(s) 106, 128, 256, 390
FatI CATG 4 cut(s) 102, 124, 252, 386
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 3 cut(s) 63, 374, 428
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 503
Hin1II CATG 4 cut(s) 106, 128, 256, 390
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 175
HphI GGTGA 2 cut(s) 142, 433
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 286, 403, 471
Hpy188III TCNNGA 4 cut(s) 35, 125, 179, 305
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 21, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 3 cut(s) 45, 273, 494
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 4 cut(s) 106, 128, 256, 390
Kzo9I GATC 4 cut(s) 31, 204, 286, 301
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 2 cut(s) 130, 164
Lsp1109I GCAGC 1 cut(s) 364
MaeI CTAG 3 cut(s) 63, 374, 428
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 382
MalI GATC 4 cut(s) 33, 206, 288, 303
MboI GATC 4 cut(s) 31, 204, 286, 301
MboII GAAGA 7 cut(s) 145, 184, 215, 454, 457, 482, 484
MflI RGATCY 1 cut(s) 301
MnlI CCTC 6 cut(s) 113, 121, 129, 417, 441, 517
MseI TTAA 3 cut(s) 438, 512, 529
MslI CAYNNNNRTG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 4 cut(s) 31, 204, 286, 301
NlaIII CATG 4 cut(s) 106, 128, 256, 390
NspI RCATGY 1 cut(s) 390
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 56
PsuI RGATCY 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 438, 512, 529
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 31, 204, 286, 301
SetI ASST 9 cut(s) 59, 76, 124, 132, 222, 279, 343, 379, 423
SfcI CTRYAG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SspMI CTAG 3 cut(s) 63, 374, 428
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 170
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 3 cut(s) 438, 512, 529
Tru9I TTAA 3 cut(s) 438, 512, 529
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 119, 241, 255, 270
TspGWI ACGGA 1 cut(s) 82
VspI ATTAAT 1 cut(s) 512
XceI RCATGY 1 cut(s) 390
XspI CTAG 3 cut(s) 63, 374, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.