Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

61906762 .. 61910759

Gene Structure 3998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG455200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAAAGAGCTTCGTGAGCGGAAGATACCCTTTACCATCTGCCACTACCTGCCTGATAGAAGCAAAAGATACTCTAAAAGTGCAGGCAAGAAAACAGCGGAGTACATGGTGGCATTAGCAGAGAAAACTAAAGACATGTCCGTGTCTGCAAGTTCTGCACTGCAATTGATTCCAGTGCAACCAGTCAATGATTTTATGGATGCTTCTAAAGTTAGTAAATTGATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V

Protein Analysis

76

Amino Acids

8.61

Weight (kDa)

9.67

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	2 cut(s)	19, 98
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	135
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
BccI	CCATC	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	173, 182
BseGI	GGATG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	173, 182
BsgI	GTGCAG	2 cut(s)	102, 141
BspACI	CCGC	2 cut(s)	19, 98
BspMI	ACCTGC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	173, 182
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 155
BstNSI	RCATGY	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 180
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	106, 136
CviJI	RGCY	1 cut(s)	10
CviKI_1	RGCY	1 cut(s)	10
CviQI	GTAC	1 cut(s)	103
FaeI	CATG	2 cut(s)	109, 139
FaiI	YATR	3 cut(s)	107, 137, 197
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	2 cut(s)	105, 135
FokI	GGATG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	109, 139
HinfI	GANTC	2 cut(s)	169, 223
Hpy188III	TCNNGA	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	83, 149, 158, 163, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 155
Hsp92II	CATG	2 cut(s)	109, 139
LpnPI	CCDG	5 cut(s)	62, 66, 69, 186, 195
LweI	GCATC	1 cut(s)	190
MbiI	CCGCTC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	164
MluCI	AATT	2 cut(s)	164, 218
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	16, 155
NlaIII	CATG	2 cut(s)	109, 139
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	169, 223
PscI	ACATGT	1 cut(s)	135
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	140
SetI	ASST	2 cut(s)	12, 51
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	164, 218
SsiI	CCGC	2 cut(s)	19, 98
TasI	AATT	2 cut(s)	164, 218
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	169, 223
TscAI	CASTG	2 cut(s)	165, 180
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	165, 180
XceI	RCATGY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.