Rh1CG086700

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000328
Physical Location & Seq
Reverse (-)
18155782 .. 18159819
4038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG086700.1

Sequence Viewer

Length: 321 bp
ATGGCGTTGGTGGTTGCTAACAATGGAAGGATTGAAGTTCAGTTTGTTGTTTTTGTTTTGGATCTCATTAGTAATGCTTATCGGTGTAGGAATGCTCAAGCCTCTTGCCCTGTTCATCAGTTTGCTCAATCTGATTTGAAGGGCATGAAGGTGAGGCTTGAGGCGACTAAAAAGAAGAGGAATTATGTGCTCAAGTATTTGAAGAATGATGTTGCCGATCTTCTCAAGAGTGGCCTTGATATTAATGCATATGGAAGGGATTTTGCTCGTCCACAAGCTCCCGCAGAGGCCCAATCACAGCTTCATGTGGCGCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

9.59

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 311
AgsI TTSAA 3 cut(s) 35, 139, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 278, 301
AluI AGCT 2 cut(s) 278, 301
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 69
AoxI GGCC 2 cut(s) 232, 288
AseI ATTAAT 1 cut(s) 243
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 312
BpuEI CTTGAG 4 cut(s) 81, 176, 179, 209
BsaHI GRCGYC 1 cut(s) 311
BshFI GGCC 2 cut(s) 234, 290
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 234, 290
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 61, 217
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 234, 290
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 310
BssMI GATC 2 cut(s) 61, 217
BssNI GRCGYC 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 311
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 64, 220
BstMBI GATC 2 cut(s) 61, 217
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 234, 290
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 289
CviAII CATG 2 cut(s) 145, 305
CviJI RGCY 6 cut(s) 101, 157, 234, 278, 290, 301
CviKI_1 RGCY 6 cut(s) 101, 157, 234, 278, 290, 301
DinI GGCGCC 1 cut(s) 312
DpnI GATC 2 cut(s) 63, 219
DpnII GATC 2 cut(s) 61, 217
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 312
EheI GGCGCC 1 cut(s) 312
FaeI CATG 2 cut(s) 148, 308
FaiI YATR 5 cut(s) 146, 186, 250, 252, 306
FatI CATG 2 cut(s) 144, 304
FauI CCCGC 1 cut(s) 289
FauNDI CATATG 1 cut(s) 250
GlaI GCGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 2 cut(s) 234, 290
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 2 cut(s) 148, 308
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 4 cut(s) 21, 133, 142, 249
HpyCH4V TGCA 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 148, 308
HspAI GCGC 1 cut(s) 311
KasI GGCGCC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 61, 217
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 1 cut(s) 123
MalI GATC 2 cut(s) 63, 219
MboI GATC 2 cut(s) 61, 217
MboII GAAGA 3 cut(s) 187, 212, 214
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 311
MnlI CCTC 5 cut(s) 112, 147, 154, 171, 280
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 97
NarI GGCGCC 1 cut(s) 311
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 61, 217
NlaIII CATG 2 cut(s) 148, 308
NlaIV GGNNCC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 250
PctI GAATGC 1 cut(s) 97
PluTI GGCGCC 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 2 cut(s) 61, 217
Sau96I GGNCC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 192
SetI ASST 3 cut(s) 153, 280, 303
SfoI GGCGCC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 4 cut(s) 96, 158, 191, 224
SmoI CTYRAG 4 cut(s) 96, 158, 191, 224
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 310
TasI AATT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 104, 161, 293
VspI ATTAAT 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.