Rh4CG110800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000328
Physical Location & Seq
Forward (+)
20855129 .. 20861319
6191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG110800.1

Sequence Viewer

Length: 444 bp
ATGCTTGCTGTGTGCTTAGCTTTGCTGATTGAAGAAGATGAATGGAAAAATGAGCTCTTCTTCATCTTCAGAAGCCTGCAAAGATGCATTCTTATGCTTAAAACGGTTGCTACCTTGAGGAGAGTGGCCGACATGGTGTTCACTATTGGGTTTGTGATGAGAAAGCTGGAAGCTAAGAATTTTGGGGTAGACCAAGCTGTTGCATTGAAACTACAGGGATATGAAAGATCATTCGAACCTCTCAAAGATAAGGCTCTTACACAATCAATCATTAATTCCTACATCGAAAAAATTGATGCTGATGTTGTGAAATTAATTTCAAATCAAGCCAAGGGAAAGGCTGCCAAAGTCTACTCCGGGCCCACTATACTGTCAACTACCCCTTCCCTCTTTCACACTATTCCAGAGCGGTGGCAAAACTTGTTGGTAACCAAGGTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

9.3

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 409
AccI GTMKAC 2 cut(s) 189, 351
AciI CCGC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 52
AfaI GTAC 1 cut(s) 438
AgsI TTSAA 3 cut(s) 32, 208, 321
AluBI AGCT 5 cut(s) 20, 55, 166, 173, 197
AluI AGCT 5 cut(s) 20, 55, 166, 173, 197
Alw21I GWGCWC 1 cut(s) 57
AoxI GGCC 2 cut(s) 126, 359
ApaI GGGCCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 178
AseI ATTAAT 2 cut(s) 273, 314
AspS9I GGNCC 2 cut(s) 359, 360
AsuC2I CCSGG 1 cut(s) 358
AsuII TTCGAA 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 57, 363
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 358
BfmI CTRYAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 342
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 359, 360
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 74, 286
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 330, 432
BseDI CCNNGG 2 cut(s) 330, 432
BseRI GAGGAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 2 cut(s) 128, 361
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 357
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 128, 361
Bsp119I TTCGAA 1 cut(s) 234
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 57, 363
Bsp143I GATC 1 cut(s) 227
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 128, 361
BspLI GGNNCC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 234
BsrBI CCGCTC 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 330, 432
BssMI GATC 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 330, 432
Bst4CI ACNGT 2 cut(s) 106, 372
Bst6I CTCTTC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 6, 77
BstDEI CTNAG 2 cut(s) 16, 174
BstEII GGTNACC 1 cut(s) 427
BstKTI GATC 1 cut(s) 230
BstMBI GATC 1 cut(s) 227
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 128, 361
Cac8I GCNNGC 2 cut(s) 6, 77
Cfr13I GGNCC 2 cut(s) 359, 360
Csp6I GTAC 1 cut(s) 437
CviAII CATG 1 cut(s) 133
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 16, 174
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 330, 432
Eco24I GRGCYC 2 cut(s) 57, 363
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 330, 432
EcoT22I ATGCAT 1 cut(s) 89
EcoT38I GRGCYC 2 cut(s) 57, 363
ErhI CCWWGG 2 cut(s) 330, 432
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 95, 134, 222, 368
FatI CATG 1 cut(s) 132
FblI GTMKAC 2 cut(s) 189, 351
Fnu4HI GCNGC 1 cut(s) 342
FriOI GRGCYC 2 cut(s) 57, 363
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 128, 361
HapII CCGG 1 cut(s) 357
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HpaII CCGG 1 cut(s) 357
Hpy166II GTNNAC 4 cut(s) 141, 190, 352, 375
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 4 cut(s) 141, 190, 352, 375
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 2 cut(s) 106, 372
HpyCH4V TGCA 3 cut(s) 79, 87, 203
HpyF3I CTNAG 2 cut(s) 16, 174
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 1 cut(s) 227
LguI GCTCTTC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 89, 152, 200, 370, 417
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 2 cut(s) 74, 286
MaeIII GTNAC 1 cut(s) 427
MalI GATC 1 cut(s) 229
MbiI CCGCTC 1 cut(s) 409
MboI GATC 1 cut(s) 227
MboII GAAGA 5 cut(s) 44, 47, 49, 52, 58
MhlI GDGCHC 2 cut(s) 57, 363
MluCI AATT 5 cut(s) 178, 274, 291, 311, 315
MnlI CCTC 3 cut(s) 111, 249, 398
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 3 cut(s) 99, 273, 314
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 358
NdeII GATC 1 cut(s) 227
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 89
NspV TTCGAA 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 343
PshBI ATTAAT 2 cut(s) 273, 314
Psp124BI GAGCTC 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 2 cut(s) 359, 360
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 3 cut(s) 99, 273, 314
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 2 cut(s) 359, 360
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 2 cut(s) 57, 363
SetI ASST 8 cut(s) 22, 57, 116, 168, 175, 199, 241, 438
SfaNI GCATC 2 cut(s) 74, 286
SfcI CTRYAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 5 cut(s) 178, 274, 291, 311, 315
SsiI CCGC 1 cut(s) 409
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 330, 432
TaaI ACNGT 2 cut(s) 106, 372
TaqI TCGA 2 cut(s) 234, 285
TasI AATT 5 cut(s) 178, 274, 291, 311, 315
Tru1I TTAA 3 cut(s) 99, 273, 314
Tru9I TTAA 3 cut(s) 99, 273, 314
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 52, 54, 237
VspI ATTAAT 2 cut(s) 273, 314
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 2 cut(s) 189, 351
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.