Rmu_sc0007472.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007472.1
OG0000328
Physical Location & Seq
Reverse (-)
84092 .. 84539
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007472.1_g000023.1.cds

Sequence Viewer

Length: 366 bp
atgggttttgtgagagatttcgagaacgtggataaggcatttggtagtagaaacattcaattgagttgggttgatgtgaggtatgaattggagtgtgatgttatggggatgcctttggagtgcaagttttgtgatcttgagttgactgagttgaaaacgttgcctagaagtagagctgatgatggcttgttttccgtggaaagcatgaagtcgcaaacaagaggtcatgaggtgaagaggccgttctggggaagtgttggcaatggagtgtcgaagattcaggttaaggctttgcacatgtcccttctgtccaaaattctggttctgaaaggcttgcacatgtcccttctgtgctatcaacattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

7.7

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 158
AcsI RAATTY 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 248
AflIII ACRYGT 2 cut(s) 297, 339
AgsI TTSAA 2 cut(s) 59, 154
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
AsuHPI GGTGA 1 cut(s) 244
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 226
BfaI CTAG 1 cut(s) 165
BmsI GCATC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 2 cut(s) 286, 328
BslI CCNNNNNNNGG 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 286, 328
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNSI RCATGY 2 cut(s) 301, 343
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 335
CciI TCATGA 1 cut(s) 226
CviAII CATG 4 cut(s) 205, 227, 298, 340
CviJI RGCY 5 cut(s) 176, 186, 241, 290, 333
CviKI_1 RGCY 5 cut(s) 176, 186, 241, 290, 333
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
FaeI CATG 4 cut(s) 208, 230, 301, 343
FaiI YATR 6 cut(s) 84, 104, 206, 228, 299, 341
FaqI GGGAC 2 cut(s) 286, 328
FatI CATG 4 cut(s) 204, 226, 297, 339
FokI GGATG 1 cut(s) 121
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 4 cut(s) 208, 230, 301, 343
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 3 cut(s) 22, 137, 227
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 2 cut(s) 314, 356
HpyCH4IV ACGT 2 cut(s) 27, 158
HpyCH4V TGCA 3 cut(s) 123, 295, 337
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 2 cut(s) 27, 158
Hsp92II CATG 4 cut(s) 208, 230, 301, 343
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 232, 266, 305
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 27, 158
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 247, 286
MfeI CAATTG 1 cut(s) 59
MluCI AATT 3 cut(s) 59, 86, 315
MnlI CCTC 4 cut(s) 72, 215, 223, 231
MseI TTAA 1 cut(s) 285
MunI CAATTG 1 cut(s) 59
NdeII GATC 1 cut(s) 133
NlaIII CATG 4 cut(s) 208, 230, 301, 343
NspI RCATGY 2 cut(s) 301, 343
PagI TCATGA 1 cut(s) 226
PciI ACATGT 2 cut(s) 297, 339
PfeI GAWTC 1 cut(s) 277
PscI ACATGT 2 cut(s) 297, 339
Psp1406I AACGTT 1 cut(s) 158
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 1 cut(s) 133
SetI ASST 7 cut(s) 30, 83, 161, 178, 226, 234, 285
SfaNI GCATC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 3 cut(s) 59, 86, 315
SspMI CTAG 1 cut(s) 165
TaiI ACGT 2 cut(s) 30, 161
TaqI TCGA 2 cut(s) 21, 272
TasI AATT 3 cut(s) 59, 86, 315
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 99, 221
TspGWI ACGGA 1 cut(s) 184
XapI RAATTY 1 cut(s) 315
XceI RCATGY 2 cut(s) 301, 343
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.