Rh5DG123600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000328
Physical Location & Seq
Forward (+)
11242106 .. 11244604
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG123600.1

Sequence Viewer

Length: 183 bp
ATGAAAGCTGGGCTAAACGATATGCTGCTCGATTTCAATGGTTCAGAGCTGCACGCCATAGGCATTATGAATAATGATGTGAGAGACTTGGTGGTTCAAAGTGAAAATGAACGCAGGGCAACCAAGAAATTGAGGGTGGAGCATGACAATTTGGATTTTCATGGGATGGAACTATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.99

Weight (kDa)

5.44

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 37, 98
AluBI AGCT 2 cut(s) 8, 49
AluI AGCT 2 cut(s) 8, 49
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 25, 49
BbvI GCAGC 2 cut(s) 12, 36
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 2 cut(s) 26, 50
BlsI GCNGC 2 cut(s) 27, 51
BseGI GGATG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 12, 36
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 12, 36
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 54
CviAII CATG 2 cut(s) 143, 161
CviJI RGCY 3 cut(s) 8, 13, 49
CviKI_1 RGCY 3 cut(s) 8, 13, 49
FaeI CATG 2 cut(s) 146, 164
FaiI YATR 6 cut(s) 23, 59, 68, 144, 162, 175
FatI CATG 2 cut(s) 142, 160
Fnu4HI GCNGC 2 cut(s) 26, 50
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 26, 50
GluI GCNGC 2 cut(s) 26, 50
GsaI CCCAGC 1 cut(s) 12
Hin1II CATG 2 cut(s) 146, 164
Hpy188I TCNGA 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 52
Hsp92II CATG 2 cut(s) 146, 164
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 12, 36
MluCI AATT 2 cut(s) 128, 148
MnlI CCTC 1 cut(s) 126
NlaIII CATG 2 cut(s) 146, 164
PkrI GCNGC 2 cut(s) 27, 51
PspFI CCCAGC 1 cut(s) 8
SatI GCNGC 2 cut(s) 26, 50
SetI ASST 2 cut(s) 10, 51
SgeI CNNG 8 cut(s) 21, 41, 65, 100, 127, 136, 155, 173
Sse9I AATT 2 cut(s) 128, 148
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 128, 148
TseI GCWGC 2 cut(s) 25, 49
TspDTI ATGAA 4 cut(s) 17, 83, 123, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.