DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 246, 329 |
| AccBSI | CCGCTC | 1 cut(s) | 208 |
| AciI | CCGC | 2 cut(s) | 208, 287 |
| AcoI | YGGCCR | 1 cut(s) | 85 |
| AfaI | GTAC | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 139 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgsI | TTSAA | 1 cut(s) | 38 |
| AluBI | AGCT | 3 cut(s) | 199, 430, 449 |
| AluI | AGCT | 3 cut(s) | 199, 430, 449 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 344 |
| AoxI | GGCC | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| BalI | TGGCCA | 1 cut(s) | 87 |
| BccI | CCATC | 2 cut(s) | 133, 233 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BfuAI | ACCTGC | 2 cut(s) | 246, 329 |
| BmsI | GCATC | 2 cut(s) | 19, 379 |
| BpmI | CTGGAG | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 1 cut(s) | 190 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 139 |
| Bse1I | ACTGG | 3 cut(s) | 362, 371, 428 |
| BseGI | GGATG | 2 cut(s) | 120, 394 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BseNI | ACTGG | 3 cut(s) | 362, 371, 428 |
| BsgI | GTGCAG | 2 cut(s) | 291, 330 |
| BshFI | GGCC | 1 cut(s) | 87 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| BsnI | GGCC | 1 cut(s) | 87 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| BspACI | CCGC | 2 cut(s) | 208, 287 |
| BspANI | GGCC | 1 cut(s) | 87 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspMI | ACCTGC | 2 cut(s) | 246, 329 |
| BsrBI | CCGCTC | 1 cut(s) | 208 |
| BsrI | ACTGG | 3 cut(s) | 362, 371, 428 |
| BssMI | GATC | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 60 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstF5I | GGATG | 2 cut(s) | 120, 394 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 205, 344 |
| BstNSI | RCATGY | 1 cut(s) | 328 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BsuRI | GGCC | 1 cut(s) | 87 |
| BtsCI | GGATG | 2 cut(s) | 120, 394 |
| BtsI | GCAGTG | 1 cut(s) | 347 |
| BtsIMutI | CAGTG | 2 cut(s) | 347, 369 |
| BveI | ACCTGC | 2 cut(s) | 246, 329 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| CaiI | CAGNNNCTG | 1 cut(s) | 344 |
| Csp6I | GTAC | 1 cut(s) | 292 |
| CviAII | CATG | 4 cut(s) | 124, 295, 325, 480 |
| CviJI | RGCY | 4 cut(s) | 87, 199, 430, 449 |
| CviKI_1 | RGCY | 4 cut(s) | 87, 199, 430, 449 |
| CviQI | GTAC | 1 cut(s) | 292 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| EaeI | YGGCCR | 1 cut(s) | 85 |
| FaeI | CATG | 4 cut(s) | 127, 298, 328, 483 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 203, 235 |
| FatI | CATG | 4 cut(s) | 123, 294, 324, 479 |
| FokI | GGATG | 2 cut(s) | 127, 401 |
| GsuI | CTGGAG | 1 cut(s) | 45 |
| HaeIII | GGCC | 1 cut(s) | 87 |
| Hin1II | CATG | 4 cut(s) | 127, 298, 328, 483 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 1 cut(s) | 403 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| HpyCH4III | ACNGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 5 cut(s) | 272, 338, 347, 352, 367 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 205, 344 |
| Hsp92II | CATG | 4 cut(s) | 127, 298, 328, 483 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LweI | GCATC | 2 cut(s) | 19, 379 |
| MalI | GATC | 1 cut(s) | 18 |
| MbiI | CCGCTC | 1 cut(s) | 208 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 1 cut(s) | 223 |
| MfeI | CAATTG | 1 cut(s) | 353 |
| MlsI | TGGCCA | 1 cut(s) | 87 |
| MluCI | AATT | 3 cut(s) | 66, 106, 353 |
| MluNI | TGGCCA | 1 cut(s) | 87 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| MnlI | CCTC | 2 cut(s) | 145, 165 |
| Mox20I | TGGCCA | 1 cut(s) | 87 |
| MscI | TGGCCA | 1 cut(s) | 87 |
| MslI | CAYNNNNRTG | 1 cut(s) | 329 |
| Msp20I | TGGCCA | 1 cut(s) | 87 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MunI | CAATTG | 1 cut(s) | 353 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 205, 344 |
| NdeII | GATC | 1 cut(s) | 16 |
| NlaIII | CATG | 4 cut(s) | 127, 298, 328, 483 |
| NspI | RCATGY | 1 cut(s) | 328 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PscI | ACATGT | 1 cut(s) | 324 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PstNI | CAGNNNCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 293 |
| RsaNI | GTAC | 1 cut(s) | 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 329 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| SetI | ASST | 6 cut(s) | 176, 201, 240, 343, 432, 451 |
| SfaNI | GCATC | 2 cut(s) | 19, 379 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 329 |
| SmlI | CTYRAG | 1 cut(s) | 169 |
| SmoI | CTYRAG | 1 cut(s) | 169 |
| Sse9I | AATT | 3 cut(s) | 66, 106, 353 |
| SsiI | CCGC | 2 cut(s) | 208, 287 |
| TaaI | ACNGT | 1 cut(s) | 60 |
| TasI | AATT | 3 cut(s) | 66, 106, 353 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| TscAI | CASTG | 2 cut(s) | 354, 369 |
| TspDTI | ATGAA | 3 cut(s) | 78, 140, 206 |
| TspGWI | ACGGA | 1 cut(s) | 319 |
| TspRI | CASTG | 2 cut(s) | 354, 369 |
| XceI | RCATGY | 1 cut(s) | 328 |