Rh2BG159500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000328
Physical Location & Seq
Forward (+)
13758173 .. 13762012
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG159500.1

Sequence Viewer

Length: 234 bp
ATGGCTGTTGGGATGAAGAGTCGATCTGTTTTTAGGTCCAACGCTCCACCCACCAATTCATCAAGAAGATTTTGTGGGTGTTCAGAAAGCGGAGAGTTCAGTGAAAGAGCCCGGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGAAGGTTCTCTTATCTTATCTATCTTTCTCTCATGTGCCTAGGTTTTCTTTGTGGGCGTCTTTGCTGTGTTGGAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.85

Weight (kDa)

10.43

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 36
AvrII CCTAGG 1 cut(s) 191
BanII GRGCYC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 131
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 106, 131
CaiI CAGNNNCTG 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 5, 110, 130
CviKI_1 RGCY 3 cut(s) 5, 110, 130
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 188
FaiI YATR 3 cut(s) 186, 230, 232
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 131
HapII CCGG 1 cut(s) 112
HgaI GACGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 188
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 63, 136
HpyAV CCTTC 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 125, 137
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 1 cut(s) 192
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 3 cut(s) 28, 78, 163
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 63, 203
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 112
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 23
NlaIII CATG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 130
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 112
SetI ASST 4 cut(s) 38, 143, 159, 197
SgeI CNNG 8 cut(s) 75, 123, 124, 136, 148, 154, 197, 204
SinI GGWCC 1 cut(s) 36
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 55
TscAI CASTG 2 cut(s) 106, 131
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 29, 48, 164
TspRI CASTG 2 cut(s) 106, 131
VpaK11BI GGWCC 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 191
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.