Rmu_sc0002271.1_g000010

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002271.1
OG0000328
Physical Location & Seq
Reverse (-)
33763 .. 34451
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002271.1_g000010.1.cds

Sequence Viewer

Length: 300 bp
atggctgagaaagttccgtcttttcaaaatggtggagctctctggtttactaatctcacaactccagatagcatgttgatccttccaattctgacagcaaggacattctggatcacagttgagaatcctaactgtcattgcaattccagttatgatgagcttcctcaaggcactgttctgttattgactcacctccaacatcttatctcttacatatggattagtgatgagatgctcaaatgtgatttgtgtactcttggaactatggcagtgagatcttgcttcacattgatcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

99

Amino Acids

11.18

Weight (kDa)

5.37

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 73, 119
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 2 cut(s) 38, 160
AluI AGCT 2 cut(s) 38, 160
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 2 cut(s) 73, 119
AsuHPI GGTGA 1 cut(s) 182
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BclI TGATCA 1 cut(s) 291
BglII AGATCT 1 cut(s) 275
BmsI GCATC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 78, 111, 275, 291
BspPI GGATC 2 cut(s) 73, 119
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 147
BssMI GATC 4 cut(s) 78, 111, 275, 291
Bst4CI ACNGT 3 cut(s) 118, 134, 175
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 4 cut(s) 81, 114, 278, 294
BstMBI GATC 4 cut(s) 78, 111, 275, 291
BstNSI RCATGY 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 171, 276
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 5, 38, 160
CviKI_1 RGCY 3 cut(s) 5, 38, 160
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 6
DpnI GATC 4 cut(s) 80, 113, 277, 293
DpnII GATC 4 cut(s) 78, 111, 275, 291
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 74, 153, 215, 217, 266
FatI CATG 1 cut(s) 72
FauNDI CATATG 1 cut(s) 215
FbaI TGATCA 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 48
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 124, 187
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 48, 252
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 65, 109
Hpy8I GTNNAC 2 cut(s) 48, 252
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 3 cut(s) 118, 134, 175
HpyCH4V TGCA 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 4 cut(s) 78, 111, 275, 291
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 28, 78, 94, 160
LweI GCATC 1 cut(s) 222
MalI GATC 4 cut(s) 80, 113, 277, 293
MboI GATC 4 cut(s) 78, 111, 275, 291
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 87, 142
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 174, 203
NdeI CATATG 1 cut(s) 215
NdeII GATC 4 cut(s) 78, 111, 275, 291
NlaIII CATG 1 cut(s) 76
NspI RCATGY 1 cut(s) 76
PfeI GAWTC 1 cut(s) 124
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 40
Sau3AI GATC 4 cut(s) 78, 111, 275, 291
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 40
SetI ASST 3 cut(s) 40, 162, 195
SfaNI GCATC 1 cut(s) 222
SgeI CNNG 9 cut(s) 55, 77, 85, 111, 121, 159, 179, 269, 291
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 87, 142
SstI GAGCTC 1 cut(s) 40
TaaI ACNGT 3 cut(s) 118, 134, 175
TasI AATT 2 cut(s) 87, 142
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 2 cut(s) 178, 276
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 2 cut(s) 178, 276
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.