Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

66187574 .. 66192387

Gene Structure 4814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAATGCCCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCACTTGAGCAAAAGATACTTTAAAAGTGCAGGCAAGAAAACAGCGGAGTACATGGTGGCATTAGCAGAGAAAACTAAAGACATGTCCGTGTCTGCAGGATACTTCAAAGGGTCTTCTAATTCATGGAATCATGGACTTCATGGTGTGGTACACCATAATATAACTTTAGCTGCTCTTGGTACATCCAGGTTGATGATAAGTTCCAAATTAATCCTTCGAGATGGAGAGAGGGCCTCCGAAACTTGCGAGCAACCCGGTGAGGCGAAAGTTCGATTTCGTGATGGCGGCGGTGAGCCTCATGCTCTCCGGACCGGGCGAGGCGAGATGAGGGCGATGTGGGCATGGAGAGGCCGTGGTTTCTTCGCAACGGCGTTGGGATCTCGACCCCGGTTCTCGAAGGCTTCGGTTGAGGGCAATTCTTGGCCGAGGGTGATGTTTTTGGACTTGGTTTGGCGGATAATGTCGGAGCGCTACGGTGGTGTCCGTGCCGGCGGCTTTCGAGGCGTTTGGGCTCGCGTTGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_V

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

10.22

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	5 cut(s)	86, 327, 330, 496, 534
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	464
AfaI	GTAC	3 cut(s)	92, 192, 223
AfeI	AGCGCT	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	427
Aor13HI	TCCGGA	1 cut(s)	348
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	3 cut(s)	273, 391, 464
ApeKI	GCWGC	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	273, 351
AsuC2I	CCSGG	3 cut(s)	297, 355, 430
AsuHPI	GGTGA	4 cut(s)	44, 311, 344, 484
AvaII	GGWCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	10, 257, 317
BceAI	ACGGC	2 cut(s)	378, 426
BciT130I	CCWGG	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	134
BcnI	CCSGG	3 cut(s)	297, 355, 430
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	568
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	213, 328, 535
BlsI	GCNGC	3 cut(s)	214, 329, 536
Bme1390I	CCNGG	4 cut(s)	229, 297, 355, 430
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	273, 351
BmrFI	CCNGG	4 cut(s)	229, 297, 355, 430
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	3 cut(s)	297, 355, 430
BsaJI	CCNNGG	3 cut(s)	394, 428, 467
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	394, 428, 467
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	275, 393, 466
BsiSI	CCGG	5 cut(s)	297, 349, 354, 430, 531
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	275, 393, 466
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	419
BspACI	CCGC	5 cut(s)	86, 327, 330, 496, 534
BspANI	GGCC	3 cut(s)	275, 393, 466
BspEI	TCCGGA	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	3 cut(s)	394, 428, 467
BssMI	GATC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	73, 290, 532, 556
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	558
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 543, 564
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	227, 295, 353, 428
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	275, 393, 466
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	4 cut(s)	73, 290, 532, 556
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	273, 351
CpoI	CGGWCCG	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	91, 191, 222
CspI	CGGWCCG	1 cut(s)	351
CviAII	CATG	7 cut(s)	94, 124, 165, 173, 182, 341, 384
CviJI	RGCY	9 cut(s)	212, 275, 337, 393, 443, 466, 537, 554, 567
CviKI_1	RGCY	9 cut(s)	212, 275, 337, 393, 443, 466, 537, 554, 567
CviQI	GTAC	3 cut(s)	91, 191, 222
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
DraI	TTTAAA	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	464
EciI	GGCGGA	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	556
FaeI	CATG	7 cut(s)	97, 127, 168, 176, 185, 344, 387
FaiI	YATR	9 cut(s)	95, 125, 166, 174, 183, 198, 203, 342, 385
FatI	CATG	7 cut(s)	93, 123, 164, 172, 181, 340, 383
Fnu4HI	GCNGC	3 cut(s)	213, 328, 535
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	213, 328, 535
FspBI	CTAG	1 cut(s)	568
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	3 cut(s)	213, 328, 535
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	275, 393, 466
HapII	CCGG	5 cut(s)	297, 349, 354, 430, 531
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	7 cut(s)	97, 127, 168, 176, 185, 344, 387
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	5 cut(s)	297, 349, 354, 430, 531
HphI	GGTGA	4 cut(s)	44, 311, 344, 484
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	280, 508
Hpy188III	TCNNGA	5 cut(s)	260, 320, 349, 423, 436
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	266, 433
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	2 cut(s)	71, 137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 543, 564
Hsp92II	CATG	7 cut(s)	97, 127, 168, 176, 185, 344, 387
HspAI	GCGC	1 cut(s)	511
Kpn2I	TCCGGA	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	419
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	568
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	2 cut(s)	147, 394
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	3 cut(s)	160, 248, 457
MmeI	TCCRAC	2 cut(s)	6, 486
MroI	TCCGGA	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	530
MseI	TTAA	2 cut(s)	63, 251
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	5 cut(s)	297, 349, 354, 430, 531
MspR9I	CCNGG	4 cut(s)	229, 297, 355, 430
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	380, 543, 564
NaeI	GCCGGC	1 cut(s)	532
NciI	CCSGG	3 cut(s)	297, 355, 430
NdeII	GATC	1 cut(s)	419
NgoMIV	GCCGGC	1 cut(s)	530
NlaIII	CATG	7 cut(s)	97, 127, 168, 176, 185, 344, 387
NmeAIII	GCCGAG	1 cut(s)	492
NspI	RCATGY	1 cut(s)	127
PciI	ACATGT	1 cut(s)	123
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	214, 329, 536
PscI	ACATGT	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	273, 351
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	3 cut(s)	92, 192, 223
RsaNI	GTAC	3 cut(s)	91, 191, 222
RseI	CAYNNNNRTG	1 cut(s)	128
Rsr2I	CGGWCCG	1 cut(s)	351
RsrII	CGGWCCG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	63, 251
SatI	GCNGC	3 cut(s)	213, 328, 535
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	2 cut(s)	273, 351
ScrFI	CCNGG	4 cut(s)	229, 297, 355, 430
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	2 cut(s)	214, 233
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	160, 248, 457
SsiI	CCGC	5 cut(s)	86, 327, 330, 496, 534
SspMI	CTAG	1 cut(s)	568
StyD4I	CCNGG	4 cut(s)	227, 295, 353, 428
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	5 cut(s)	259, 313, 424, 437, 541
TasI	AATT	3 cut(s)	160, 248, 457
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	2 cut(s)	330, 537
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	63, 251
Tru9I	TTAA	2 cut(s)	63, 251
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	17, 153, 170
TspGWI	ACGGA	2 cut(s)	118, 515
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	251
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.