Prupe.2G186800_v2.0.a1

Mitochondrial inner membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000328
Physical Location & Seq
Reverse (-)
22771546 .. 22773022
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G186800.1

Sequence Viewer

Length: 498 bp
ATGCAGATTAGAAACATGGCTGAGAAGGTTCCTTCATTTCAAAGTGGTGGAGCTCTTTGGTTTACTGATCTCACTACTCCAGATAGCTTGCTCATCCTTCCAGTTCTGACATCATTGACATTCTTGATTACAGTAGAGTGCAATATGCAGGAGGGTCTTGAAGGGAATCCCATTGCCCAAACTATGAAAAACTATTCTAGAATCCTTGCTGCCATTTCAGTTCCTGTAATGATGAGTTTCCCCAAGGCACTGTTCTGTTATTGGCTCACCTCCAACCTCTTCTCCCTTACATATGGTTTAGGTGAGTGCTTCCTGCAATTCACTTTGCAGGCACTGTTCTGTTTTTTGTCTTCGGCAATTGAACAGGACACTACAGCTGAATCAGGACCTTCGTTACCCACCGTTCCATCAAAGGTTGCTGACAGAAGAATATCACGGACTTCAATTTTCAAGCAGAGACTTAAAAAGTCTGGAAAATCAAATCAAGGAAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP

Protein Analysis

166

Amino Acids

18.29

Weight (kDa)

9.16

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 5 cut(s) 41, 161, 362, 444, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 3 cut(s) 53, 87, 377
AluI AGCT 3 cut(s) 53, 87, 377
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 451
AlwNI CAGNNNCTG 2 cut(s) 224, 334
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 259, 314
AvaII GGWCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 133, 252, 336, 403
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 89, 330
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 248, 332
Cac8I GCNNGC 2 cut(s) 89, 330
CaiI CAGNNNCTG 2 cut(s) 224, 334
Cfr13I GGNCC 1 cut(s) 386
CviAII CATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 20, 53, 87, 265, 377
CviKI_1 RGCY 5 cut(s) 20, 53, 87, 265, 377
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 19
FaiI YATR 5 cut(s) 17, 146, 185, 292, 294
FatI CATG 1 cut(s) 15
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 63
Hin1II CATG 1 cut(s) 19
HinfI GANTC 3 cut(s) 166, 201, 380
HphI GGTGA 2 cut(s) 259, 314
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 6 cut(s) 80, 124, 158, 198, 384, 471
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 5 cut(s) 19, 42, 107, 155, 399
HpyCH4III ACNGT 4 cut(s) 133, 252, 336, 403
HpyCH4V TGCA 5 cut(s) 4, 141, 148, 316, 328
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 9 cut(s) 93, 114, 134, 237, 314, 326, 350, 369, 456
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 393
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 3 cut(s) 271, 342, 438
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 317, 357, 444
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 3 cut(s) 145, 280, 287
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 377
MunI CAATTG 1 cut(s) 357
NdeI CATATG 1 cut(s) 292
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 166, 201, 380
PkrI GCNGC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 386
PspPPI RGGWCCY 1 cut(s) 386
PstNI CAGNNNCTG 2 cut(s) 224, 334
PvuII CAGCTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 386
SduI GDGCHC 1 cut(s) 55
SetI ASST 9 cut(s) 30, 55, 89, 272, 279, 304, 379, 391, 417
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 386
Sse9I AATT 3 cut(s) 317, 357, 444
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 55
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 4 cut(s) 133, 252, 336, 403
TasI AATT 3 cut(s) 317, 357, 444
TfiI GAWTC 3 cut(s) 166, 201, 380
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 255, 339
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 24, 200
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 255, 339
VpaK11BI GGWCC 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.