Rh6DG020300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000328
Physical Location & Seq
Forward (+)
1805787 .. 1809426
3640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG020300.1

Sequence Viewer

Length: 180 bp
ATGATTCATATGTTAGCAGCACGTGTATATCGCATAAGAGTATCGGTTCCTCGGGAGATTGATCATTGGGTGAAGCAGAAGTTTTGCTTATCACTGGTGGAGATCAGTTTCTCTGTTAACAGTCGGTGCTTTTTTTACAATCAGATGCAGGCTGATTTATCATTTGCGGATGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

7.0

Weight (kDa)

7.84

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AcvI CACGTG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 22
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 29
BclI TGATCA 1 cut(s) 61
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 2 cut(s) 61, 102
BspACI CCGC 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 61, 102
Bst4CI ACNGT 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 64, 105
BstMBI GATC 2 cut(s) 61, 102
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 150
CviAII CATG 1 cut(s) 177
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
DpnI GATC 2 cut(s) 63, 104
DpnII GATC 2 cut(s) 61, 102
Eco72I CACGTG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 51
FaeI CATG 1 cut(s) 180
FaiI YATR 5 cut(s) 9, 11, 28, 35, 178
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 1 cut(s) 176
FauNDI CATATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 180
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 61, 102
LpnPI CCDG 2 cut(s) 80, 134
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 22
MalI GATC 2 cut(s) 63, 104
MboI GATC 2 cut(s) 61, 102
MnlI CCTC 1 cut(s) 60
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeI CATATG 1 cut(s) 9
NdeII GATC 2 cut(s) 61, 102
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 23
PspCI CACGTG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 61, 102
SetI ASST 1 cut(s) 25
SfaNI GCATC 1 cut(s) 135
SgeI CNNG 6 cut(s) 33, 35, 63, 65, 107, 161
SsiI CCGC 1 cut(s) 167
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 25
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.