Rh2DG603500

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000328
Physical Location & Seq
Reverse (-)
83639989 .. 83640610
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG603500.1

Sequence Viewer

Length: 291 bp
ATGGGTTCCATCATTCTTTTTGTGCAGAAAGATATTCATGGGAGGCTTGACAAAGAACAAGGGGTTATCAACTTTGCTTATCGGCATTGGTTGTTTTCAGGAACTGGATTGGCTGCTGTTCATCAATATTTATTCACCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

10.17

Isoelectric Point (pI)

7.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 224, 233
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 113
AseI ATTAAT 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 127, 175
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 17
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 246
BsnI GGCC 1 cut(s) 246
BspANI GGCC 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 104
CviAII CATG 2 cut(s) 38, 280
CviJI RGCY 5 cut(s) 46, 113, 169, 246, 284
CviKI_1 RGCY 5 cut(s) 46, 113, 169, 246, 284
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 224, 233
FaeI CATG 2 cut(s) 41, 283
FaiI YATR 6 cut(s) 39, 149, 158, 262, 264, 281
FatI CATG 2 cut(s) 37, 279
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 2 cut(s) 41, 283
HphI GGTGA 2 cut(s) 127, 175
Hpy188I TCNGA 2 cut(s) 145, 213
Hpy188III TCNNGA 2 cut(s) 99, 238
HpyCH4V TGCA 1 cut(s) 25
Hsp92II CATG 2 cut(s) 41, 283
LpnPI CCDG 2 cut(s) 84, 90
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 170
MboII GAAGA 4 cut(s) 196, 199, 224, 226
MnlI CCTC 4 cut(s) 36, 159, 183, 260
MseI TTAA 3 cut(s) 180, 255, 272
MslI CAYNNNNRTG 1 cut(s) 161
NlaIII CATG 2 cut(s) 41, 283
NlaIV GGNNCC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 3 cut(s) 180, 255, 272
SatI GCNGC 1 cut(s) 114
SetI ASST 1 cut(s) 165
SgeI CNNG 8 cut(s) 50, 59, 71, 111, 117, 182, 250, 260
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SspI AATATT 1 cut(s) 128
SspMI CTAG 1 cut(s) 170
Tru1I TTAA 3 cut(s) 180, 255, 272
Tru9I TTAA 3 cut(s) 180, 255, 272
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 26, 110, 268
VspI ATTAAT 1 cut(s) 255
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.