Prupe.2G073100_v2.0.a1

galactinol--sucrose galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000328
Physical Location & Seq
Reverse (-)
11061096 .. 11061736
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G073100.1

Sequence Viewer

Length: 582 bp
ATGACGGTTGGGGCTGGGATTTGTGTTGAAGATGGGAACTTGATGGTGTTTGGGAACAAAGTGTTGTCTGATGTTCATGACAACGTTGTTGTTACTCCAGCCTCTGGTGGTGCACTTACCAATGGGGCTTTCATTGGGGTCCAATCTGATCAGATTGGTAGTCGCAGGGTCTTTCCAATTGGCAAACTTGATGGATTGCATTTTATGTGTGTTTTTCGGTTTAAACTATGGTGGATGACACAGAGGATGGGCACAAGTGGCCAAGATGTTCCCTTTGAGACTCAGTTTTTGATTGTTGAGACAAAGGAGGGTTCTGATTTTGGTGAAGGAAGCAAAGATGGGGTGGATCAATCTGCAGTTTATACAGTTTTCCTACCAATTCTTGAAGGGGACTTCAGGGCTGTTCTTCAAGGGAATGAACTTAATGAGATTGAAATCTGCCTAGAAAGTGGAGATCCAGCTGTTGCTGGTTGTTGTGGGAGGTGTTTGTTTTCTGATTATGGAGTTGAGATTAGGGCAGCTAGACTCGTAGAAGGACCACGAAAGCCCTTTAACCACAGAAACAGAAGGTTGTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Raffinose_syn

Protein Analysis

194

Amino Acids

21.05

Weight (kDa)

5.08

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 104
AclI AACGTT 1 cut(s) 84
AclWI GGATC 2 cut(s) 354, 449
AcoI YGGCCR 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 4 cut(s) 29, 386, 410, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 461, 521
AluI AGCT 2 cut(s) 461, 521
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 272, 293
Alw44I GTGCAC 1 cut(s) 111
AlwI GGATC 2 cut(s) 354, 449
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 259
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AspS9I GGNCC 2 cut(s) 139, 536
AsuHPI GGTGA 1 cut(s) 335
AvaII GGWCC 2 cut(s) 139, 536
BaeGI GKGCMC 2 cut(s) 115, 254
BalI TGGCCA 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 530
BccI CCATC 5 cut(s) 26, 37, 185, 241, 332
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 272, 293
BfaI CTAG 2 cut(s) 443, 522
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme18I GGWCC 2 cut(s) 139, 536
BmgT120I GGNCC 2 cut(s) 139, 536
BmiI GGNNCC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 434
BseGI GGATG 2 cut(s) 240, 252
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 296
BseSI GKGCMC 2 cut(s) 115, 254
BseXI GCAGC 1 cut(s) 530
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 272, 293
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 115, 254
Bsp143I GATC 3 cut(s) 148, 346, 454
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 354, 449
BssMI GATC 3 cut(s) 148, 346, 454
Bst4CI ACNGT 2 cut(s) 7, 367
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 240, 252
BstKTI GATC 3 cut(s) 151, 349, 457
BstMAI GTCTC 2 cut(s) 272, 293
BstMBI GATC 3 cut(s) 148, 346, 454
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 2 cut(s) 115, 254
BstV1I GCAGC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 240, 252
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 139, 536
CviAII CATG 1 cut(s) 77
CviJI RGCY 8 cut(s) 14, 101, 128, 261, 401, 461, 521, 547
CviKI_1 RGCY 8 cut(s) 14, 101, 128, 261, 401, 461, 521, 547
DdeI CTNAG 1 cut(s) 282
DpnI GATC 3 cut(s) 150, 348, 456
DpnII GATC 3 cut(s) 148, 346, 454
DraI TTTAAA 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 139, 536
Eco57I CTGAAG 1 cut(s) 379
FaeI CATG 1 cut(s) 80
FaiI YATR 5 cut(s) 78, 206, 229, 363, 501
FaqI GGGAC 1 cut(s) 404
FatI CATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 2 cut(s) 247, 259
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 2 cut(s) 443, 522
GluI GCNGC 1 cut(s) 519
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 1 cut(s) 80
HinfI GANTC 2 cut(s) 280, 525
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 6 cut(s) 70, 148, 153, 316, 496, 581
Hpy188III TCNNGA 2 cut(s) 77, 383
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 320, 380, 527, 561
HpyCH4III ACNGT 2 cut(s) 7, 367
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 113, 199, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 148, 346, 454
LpnPI CCDG 6 cut(s) 90, 111, 151, 382, 453, 471
Lsp1109I GCAGC 1 cut(s) 530
MaeI CTAG 2 cut(s) 443, 522
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 150, 348, 456
MboI GATC 3 cut(s) 148, 346, 454
MboII GAAGA 2 cut(s) 41, 398
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 115, 254
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 2 cut(s) 177, 378
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 2 cut(s) 274, 519
MnlI CCTC 4 cut(s) 112, 237, 301, 474
Mox20I TGGCCA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 261
MseI TTAA 3 cut(s) 222, 423, 552
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 461
MssI GTTTAAAC 1 cut(s) 223
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 3 cut(s) 148, 346, 454
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 140
PagI TCATGA 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 2 cut(s) 274, 519
PmeI GTTTAAAC 1 cut(s) 223
PpsI GAGTC 2 cut(s) 274, 519
Psp1406I AACGTT 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 139, 536
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 222, 423, 552
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 3 cut(s) 148, 346, 454
Sau96I GGNCC 2 cut(s) 139, 536
SchI GAGTC 2 cut(s) 274, 519
SduI GDGCHC 2 cut(s) 115, 254
SetI ASST 5 cut(s) 87, 463, 485, 523, 572
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 139, 536
Sse9I AATT 2 cut(s) 177, 378
SspMI CTAG 2 cut(s) 443, 522
TaaI ACNGT 2 cut(s) 7, 367
TaiI ACGT 1 cut(s) 87
TasI AATT 2 cut(s) 177, 378
Tru1I TTAA 3 cut(s) 222, 423, 552
Tru9I TTAA 3 cut(s) 222, 423, 552
TseI GCWGC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 65, 121, 432
Van91I CCANNNNNTGG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 139, 536
XspI CTAG 2 cut(s) 443, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.