Rw4G011330

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000328
Physical Location & Seq
Reverse (-)
26863693 .. 26864559
867 bp
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UTR
Exon/CDS
Intron
Rw4G011330.1

Sequence Viewer

Length: 390 bp
ATGTTTTTCATGCAGCGCAAAAAGGTTCTGGACATTAGTGAGGTTCAGACCTATGTGATAAACAGTGTTAGAGTTGTCTTCTTGAATGAGAGGCCTCAACCAAAAGTTGGAATCAAAGGAGTCCTCCACATTTGCTTAATCCTACTTCGGCTATTATGTACAGCACCAAAGAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTTCATGAGAGAGGCTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTTCCACTCAGTCTTATACCTACAGAAATGTTATGTCTCAGGTCTGCTGTATTTTGCTTTGTATATTATTTAGTACTTGTACATATTCATTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

129

Amino Acids

14.93

Weight (kDa)

9.41

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 7 - 52 1.9e-10 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AclWI GGATC 1 cut(s) 256
AfaI GTAC 3 cut(s) 160, 367, 373
AfiI CCNNNNNNNGG 2 cut(s) 107, 289
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 256
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 18
BbsI GAAGAC 3 cut(s) 70, 186, 271
BbvI GCAGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 367
BpiI GAAGAC 3 cut(s) 70, 186, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 289
BseLI CCNNNNNNNGG 2 cut(s) 107, 289
BseMII CTCAG 3 cut(s) 246, 314, 344
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 107, 289
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 158, 371
Bsp143I GATC 2 cut(s) 212, 248
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 3 cut(s) 247, 313, 343
BspHI TCATGA 1 cut(s) 234
BspPI GGATC 1 cut(s) 256
BsrGI TGTACA 2 cut(s) 158, 371
BssMI GATC 2 cut(s) 212, 248
Bst4CI ACNGT 1 cut(s) 65
BstAUI TGTACA 2 cut(s) 158, 371
BstDEI CTNAG 3 cut(s) 255, 300, 330
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 215, 251
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 212, 248
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 3 cut(s) 70, 186, 271
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 70
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 159, 366, 372
CviAII CATG 3 cut(s) 10, 224, 235
CviJI RGCY 6 cut(s) 94, 151, 245, 254, 261, 293
CviKI_1 RGCY 6 cut(s) 94, 151, 245, 254, 261, 293
CviQI GTAC 3 cut(s) 159, 366, 372
DdeI CTNAG 3 cut(s) 255, 300, 330
DpnI GATC 2 cut(s) 214, 250
DpnII GATC 2 cut(s) 212, 248
Eco147I AGGCCT 1 cut(s) 94
FaeI CATG 3 cut(s) 13, 227, 238
FatI CATG 3 cut(s) 9, 223, 234
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 94
HhaI GCGC 1 cut(s) 18
Hin1II CATG 3 cut(s) 13, 227, 238
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 2 cut(s) 111, 120
Hpy188I TCNGA 2 cut(s) 48, 212
Hpy188III TCNNGA 3 cut(s) 29, 82, 235
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 255, 300, 330
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 3 cut(s) 13, 227, 238
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 212, 248
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 4 cut(s) 14, 201, 231, 317
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 214, 250
MboI GATC 2 cut(s) 212, 248
MboII GAAGA 3 cut(s) 70, 191, 271
MfeI CAATTG 1 cut(s) 273
MluCI AATT 1 cut(s) 273
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 6 cut(s) 34, 84, 105, 134, 183, 235
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 254
MunI CAATTG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 2 cut(s) 212, 248
NlaIII CATG 3 cut(s) 13, 227, 238
NspI RCATGY 1 cut(s) 227
PagI TCATGA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 94
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 3 cut(s) 160, 367, 373
RsaNI GTAC 3 cut(s) 159, 366, 372
RseI CAYNNNNRTG 1 cut(s) 385
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 2 cut(s) 212, 248
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 129
SetI ASST 7 cut(s) 27, 45, 53, 256, 268, 314, 336
SfcI CTRYAG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 94
StuI AGGCCT 1 cut(s) 94
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 268
TasI AATT 1 cut(s) 273
TatI WGTACW 3 cut(s) 158, 365, 371
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 223, 369
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.