Rroxscaffold_5G00379280

Mitochondrial inner membrane protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
59714308 .. 59714637
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379280.1

Sequence Viewer

Length: 330 bp
ATGGACTCTTTATTCAAGCTCCTCGTCTTCATCGGCTTTTTCCTAGCAATATCTAACATGGCAGAGAAGGTGTCATCATTTAAAGATGGTGGTGCCTATTGGTTTGTTGATCCGACAACTCCTGATCCTATGTACATTTTTCCAGTTTTGGCGGGATTGACATTCTTAATAACGGTGGAGTGCAATCTGCAAGAAGGTATGGAGGGAAATCCTGTTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGTTGTTCTTACAGTTCCATTTACCATGGGCTTTCCAAAGGTGATCAATGGATTGACTTGGCGGACGATGGTAAATCGTTGA

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

7.86

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 152, 310
AclWI GGATC 2 cut(s) 104, 119
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 16, 240
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 2 cut(s) 104, 119
AsuHPI GGTGA 1 cut(s) 301
BanI GGYRCC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 19
BccI CCATC 2 cut(s) 80, 310
BclI TGATCA 1 cut(s) 291
BfaI CTAG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 3 cut(s) 109, 124, 291
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 2 cut(s) 152, 310
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 104, 119
BspT107I GGYRCC 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 109, 124, 291
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 175, 262
BstAUI TGTACA 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 3 cut(s) 112, 127, 294
BstMBI GATC 3 cut(s) 109, 124, 291
BstV2I GAAGAC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 273
Csp6I GTAC 1 cut(s) 133
CviAII CATG 4 cut(s) 58, 226, 247, 274
CviJI RGCY 3 cut(s) 19, 36, 279
CviKI_1 RGCY 3 cut(s) 19, 36, 279
CviQI GTAC 1 cut(s) 133
DpnI GATC 3 cut(s) 111, 126, 293
DpnII GATC 3 cut(s) 109, 124, 291
DraI TTTAAA 1 cut(s) 82
EciI GGCGGA 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 61, 229, 250, 277
FaiI YATR 6 cut(s) 59, 131, 200, 227, 248, 275
FatI CATG 4 cut(s) 57, 225, 246, 273
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 291
FspBI CTAG 1 cut(s) 44
Hin1II CATG 4 cut(s) 61, 229, 250, 277
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 122, 240
HpyAV CCTTC 2 cut(s) 61, 188
HpyCH4III ACNGT 2 cut(s) 175, 262
HpyCH4V TGCA 2 cut(s) 183, 190
Hsp92II CATG 4 cut(s) 61, 229, 250, 277
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 109, 124, 291
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 135, 156, 225
MaeI CTAG 1 cut(s) 44
MalI GATC 3 cut(s) 111, 126, 293
MboI GATC 3 cut(s) 109, 124, 291
MboII GAAGA 2 cut(s) 19, 241
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 3 cut(s) 32, 196, 236
MseI TTAA 2 cut(s) 81, 167
NcoI CCATGG 1 cut(s) 273
NdeII GATC 3 cut(s) 109, 124, 291
NlaIII CATG 4 cut(s) 61, 229, 250, 277
NlaIV GGNNCC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 81, 167
Sau3AI GATC 3 cut(s) 109, 124, 291
SetI ASST 4 cut(s) 21, 72, 199, 291
SsiI CCGC 2 cut(s) 152, 310
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 175, 262
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 2 cut(s) 81, 167
Tru9I TTAA 2 cut(s) 81, 167
TspDTI ATGAA 2 cut(s) 19, 242
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.