Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

34563117 .. 34566206

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAGAGCTTCGAGATGACATCAAAATGCATCTTGGTTTGGACAGGGCTACACCTACACATATAGGATACTGGGAGGTATTATTCCTTTGTCTTTTCCTTTTATTGCTTTCTACCTATGACATAATCTACTTAACTGAAGAATACGAGCACTCAGATTACTCAATTAAGGTCATGATGATAATCTACTTAACTATTACAGCTGAGGTTGTGGCAGGATCAGCAGCTTGGCTTGGCCGAGGACTTTCTTGTGTGTGTGCACAGAGAAGAGAGAGTGATGCTCGTCCTTCCTTTGATCTAACCCCTGCCCAGAAATTGCCTGCCTTGCTTCAACCACATGGCACCCAAGCCTGTCAAAAGGATGAAGTGGTTGAATTGAGGAGAAAGTGGAACAGGTTATGCTACAGTCTGCACCAAGGAAGGCATAATCCGAACCATTCAAGCCCCGCTTTGTACAACCATCAAAACTCAATTGGGAAGAACCACTCTTATAGTACTTCATCTCAGTATCACATCATATTCACTTTCAACTTGGGATTTAGCAAAAAGTTTGCACAAGGATTGTGTTGCAAGAAAGGAACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009536 GO:0010232 GO:0010233 GO:0032501 GO:0033500 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0051179 GO:0051234 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

8.15

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	455, 496
AgsI	TTSAA	4 cut(s)	332, 374, 441, 529
AluBI	AGCT	4 cut(s)	10, 203, 227, 585
AluI	AGCT	4 cut(s)	10, 203, 227, 585
Alw21I	GWGCWC	2 cut(s)	153, 262
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	235
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	341
Bbv12I	GWGCWC	2 cut(s)	153, 262
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	343, 580
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	40, 268
BmuI	ACTGGG	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu10I	CCTNAGC	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	238, 415
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	238, 415
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	168, 195, 518
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	2 cut(s)	153, 262
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	153, 262
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	218, 295
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	167, 196, 517
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	343, 580
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	238, 415
BssMI	GATC	2 cut(s)	218, 295
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	154, 204, 504
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	2 cut(s)	221, 298
BstMBI	GATC	2 cut(s)	218, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 325
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	236
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	454, 495
CviAII	CATG	2 cut(s)	175, 338
CviJI	RGCY	9 cut(s)	10, 50, 203, 227, 232, 237, 350, 444, 585
CviKI_1	RGCY	9 cut(s)	10, 50, 203, 227, 232, 237, 350, 444, 585
CviQI	GTAC	2 cut(s)	454, 495
DdeI	CTNAG	3 cut(s)	154, 204, 504
DpnI	GATC	2 cut(s)	220, 297
DpnII	GATC	2 cut(s)	218, 295
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	178, 341
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	2 cut(s)	174, 337
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	178, 341
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	157, 432
Hpy188III	TCNNGA	2 cut(s)	14, 175
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	297, 414
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	5 cut(s)	31, 260, 412, 554, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 325
HpyF3I	CTNAG	3 cut(s)	154, 204, 504
Hsp92II	CATG	2 cut(s)	178, 341
Kzo9I	GATC	2 cut(s)	218, 295
LpnPI	CCDG	8 cut(s)	31, 58, 201, 318, 323, 333, 364, 379
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	40, 268
MalI	GATC	2 cut(s)	220, 297
MboI	GATC	2 cut(s)	218, 295
MboII	GAAGA	4 cut(s)	17, 152, 279, 490
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	153, 262
MluCI	AATT	4 cut(s)	165, 314, 374, 471
MnlI	CCTC	4 cut(s)	70, 199, 233, 372
Mph1103I	ATGCAT	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	134, 168, 191
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	221, 325
NdeII	GATC	2 cut(s)	218, 295
NlaIII	CATG	2 cut(s)	178, 341
NlaIV	GGNNCC	2 cut(s)	343, 580
NmeAIII	GCCGAG	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	33
PagI	TCATGA	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	343, 580
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	455, 496
RsaNI	GTAC	2 cut(s)	454, 495
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	134, 168, 191
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	218, 295
ScaI	AGTACT	1 cut(s)	496
SduI	GDGCHC	2 cut(s)	153, 262
SfaNI	GCATC	2 cut(s)	40, 268
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	165, 314, 374, 471
SsiI	CCGC	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	13
TasI	AATT	4 cut(s)	165, 314, 374, 471
TatI	WGTACW	2 cut(s)	453, 494
Tru1I	TTAA	3 cut(s)	134, 168, 191
Tru9I	TTAA	3 cut(s)	134, 168, 191
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	378, 489
VneI	GTGCAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.