Rh5AG038800

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000328
Physical Location & Seq
Reverse (-)
2876865 .. 2879771
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG038800.1

Sequence Viewer

Length: 480 bp
ATGATATTTAGGGACCTAGAGCTACAAACTGGGGGAGGTGGTGGAGATATTGGAAAGAAGATAAATCATGGAGGTGGTGAGGGAGGTGACGATGATGGCGATGATGATGATTATTTTGATGACTTTGATGACGGTGATGAGGGGGATGAGGGTGGCCTTTTTAGAAAACGCATGTTTCTTGAAGAGCTGTTTGATCGCAAATTTGTAGATGCAGTTTTGAACGAGTGGCAAAAGACAATGATGGATTTACCTGCAGGCTTTCGGCAAGCTTATGAAATGGGATTGGTCAGCTCCGCTCAAATGGCTGATGCAATCATATCAAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAATTGCGGCAGATACAGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACTTAAAGGATGCTGAACCAACACTATTAATTACCTCTGATCAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

159

Amino Acids

17.5

Weight (kDa)

4.15

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 296
AciI CCGC 2 cut(s) 294, 383
AcsI RAATTY 1 cut(s) 200
AgsI TTSAA 2 cut(s) 182, 220
AluBI AGCT 5 cut(s) 22, 187, 269, 291, 415
AluI AGCT 5 cut(s) 22, 187, 269, 291, 415
AoxI GGCC 2 cut(s) 154, 407
ApoI RAATTY 1 cut(s) 200
AseI ATTAAT 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 3 cut(s) 89, 98, 146
AvaII GGWCC 1 cut(s) 13
BccI CCATC 3 cut(s) 89, 235, 410
BclI TGATCA 1 cut(s) 469
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 14
BmrI ACTGGG 2 cut(s) 39, 413
BmsI GCATC 4 cut(s) 199, 298, 343, 430
BmuI ACTGGG 2 cut(s) 39, 413
Bpu10I CCTNAGC 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 34, 419
BseGI GGATG 4 cut(s) 151, 358, 402, 445
BseNI ACTGG 2 cut(s) 34, 419
BshFI GGCC 2 cut(s) 156, 409
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 156, 409
Bsp143I GATC 2 cut(s) 193, 469
BspACI CCGC 2 cut(s) 294, 383
BspANI GGCC 2 cut(s) 156, 409
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 34, 419
BssMI GATC 2 cut(s) 193, 469
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 256, 267
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 4 cut(s) 151, 358, 402, 445
BstKTI GATC 2 cut(s) 196, 472
BstMBI GATC 2 cut(s) 193, 469
BstMWI GCNNNNNNNGC 2 cut(s) 302, 392
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 156, 409
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 4 cut(s) 151, 358, 402, 445
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 256, 267
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 2 cut(s) 68, 172
DdeI CTNAG 1 cut(s) 411
DpnI GATC 2 cut(s) 195, 471
DpnII GATC 2 cut(s) 193, 469
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 13
FaeI CATG 2 cut(s) 71, 175
FaiI YATR 6 cut(s) 69, 173, 273, 317, 339, 478
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 67, 171
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 4 cut(s) 158, 365, 389, 452
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 17
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 2 cut(s) 156, 409
HapII CCGG 1 cut(s) 406
Hin1II CATG 2 cut(s) 71, 175
HindIII AAGCTT 1 cut(s) 267
HpaII CCGG 1 cut(s) 406
HphI GGTGA 3 cut(s) 89, 98, 146
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 212, 254, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 392
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 2 cut(s) 71, 175
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 193, 469
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 296, 420
LpnPI CCDG 6 cut(s) 15, 240, 264, 375, 419, 432
LweI GCATC 4 cut(s) 199, 298, 343, 430
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 195, 471
MbiI CCGCTC 1 cut(s) 296
MboI GATC 2 cut(s) 193, 469
MboII GAAGA 2 cut(s) 70, 194
MfeI CAATTG 1 cut(s) 372
MluCI AATT 4 cut(s) 200, 372, 378, 459
MnlI CCTC 7 cut(s) 29, 65, 73, 77, 133, 142, 475
MseI TTAA 2 cut(s) 434, 458
MslI CAYNNNNRTG 1 cut(s) 72
MspI CCGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 302, 392
NdeII GATC 2 cut(s) 193, 469
NlaIII CATG 2 cut(s) 71, 175
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PkrI GCNGC 1 cut(s) 385
PpuMI RGGWCCY 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
PstI CTGCAG 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 434, 458
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 193, 469
Sau96I GGNCC 1 cut(s) 13
SbfI CCTGCAGG 1 cut(s) 256
SdaI CCTGCAGG 1 cut(s) 256
SfaNI GCATC 4 cut(s) 199, 298, 343, 430
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse8387I CCTGCAGG 1 cut(s) 256
Sse9I AATT 4 cut(s) 200, 372, 378, 459
SsiI CCGC 2 cut(s) 294, 383
SspMI CTAG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 134
TasI AATT 4 cut(s) 200, 372, 378, 459
TauI GCSGC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 434, 458
Tru9I TTAA 2 cut(s) 434, 458
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 458
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.