Rw6G002230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000328
Physical Location & Seq
Reverse (-)
3584509 .. 3591387
6879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002230.1

Sequence Viewer

Length: 270 bp
ATGGCATGCACTACTAGGAAAAGGGAAAAGGGCCAAACGTTACTGACAGGATGGAGCGAAGTAAACAGAGGAAGAAAGGAGAGAAGAAGAGGCCATCCCTTCAAAATGTGCTTAGCTTTGCTGATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTCAGCTTCAGAAGCCTGCAAAGATGCATTCTTATGCTTAAAACGGTTGCTACCTTGAGGAGAGATGCTACTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.48

Weight (kDa)

9.68

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AclI AACGTT 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 142, 148
AgsI TTSAA 2 cut(s) 103, 128
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 4 cut(s) 116, 151, 162, 238
AluI AGCT 4 cut(s) 116, 151, 162, 238
Alw21I GWGCWC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 3 cut(s) 31, 91, 259
AspS9I GGNCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 45, 102
BciT130I CCWGG 1 cut(s) 250
BfaI CTAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 262
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 2 cut(s) 170, 211
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
BseBI CCWGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 56, 94
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 229
BshFI GGCC 3 cut(s) 33, 93, 261
BsiHKAI GWGCWC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 3 cut(s) 33, 93, 261
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1720I GCTNAGC 1 cut(s) 112
BspACI CCGC 1 cut(s) 262
BspANI GGCC 3 cut(s) 33, 93, 261
BspCNI CTCAG 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 82, 158
BstC8I GCNNGC 3 cut(s) 7, 173, 259
BstDEI CTNAG 2 cut(s) 112, 231
BstF5I GGATG 2 cut(s) 56, 94
BstMWI GCNNNNNNNGC 2 cut(s) 168, 254
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 248
BsuRI GGCC 3 cut(s) 33, 93, 261
BtsCI GGATG 2 cut(s) 56, 94
Cac8I GCNNGC 3 cut(s) 7, 173, 259
CaiI CAGNNNCTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 1 cut(s) 6
CviJI RGCY 8 cut(s) 33, 93, 116, 151, 162, 171, 238, 261
CviKI_1 RGCY 8 cut(s) 33, 93, 116, 151, 162, 171, 238, 261
DdeI CTNAG 2 cut(s) 112, 231
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 82, 158
EarI CTCTTC 2 cut(s) 82, 158
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 142, 148
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 191, 268
FatI CATG 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 63, 81
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 262
HaeIII GGCC 3 cut(s) 33, 93, 261
Hin1II CATG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 9, 175, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 254
HpyF3I CTNAG 2 cut(s) 112, 231
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 54, 235
LpnPI CCDG 6 cut(s) 33, 185, 218, 235, 243, 262
LweI GCATC 2 cut(s) 170, 211
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 39
MboII GAAGA 7 cut(s) 84, 96, 99, 140, 143, 145, 148
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 3 cut(s) 62, 83, 207
Mph1103I ATGCAT 1 cut(s) 185
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 168, 254
NlaIII CATG 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 185
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 158
PctI GAATGC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 153
SetI ASST 6 cut(s) 41, 118, 153, 164, 212, 240
SfaNI GCATC 2 cut(s) 170, 211
SgeI CNNG 8 cut(s) 18, 27, 60, 184, 223, 245, 261, 262
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 9
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 41
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 150
XceI RCATGY 1 cut(s) 9
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.