Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

77896121 .. 77899954

Gene Structure 3834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCAAGAAAGGTCTTTTGCTATGGATTTCTGTGTGCTTAGCTTTGCTGATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTCAGCTTCAGAAGGTATTCCAACTGGGAAGTTTATCAAACCTGTCCTGAATGCTTTCCTCCATTGGAGTTGAGAATTTGGTCCGCTTTTCAGGGCACATGCAGCTTTTTGTTCACTGTAATTCCAAACTTCACAAAGATTTTGCTTTCAGCTTTCGAGTGTGCGCATTGCAATGAGAGGAACATTGAGGTTCAGTTTGCTGGTGAGCTTCAACCGAAGGGTTGTAACTACCACTTGAAGGAGAGCAAGCCAGATTTGGCTGCAGTAGTCGCAAGTCGGGATAAATTAGTCAAGAAATTTGTGAAAGCTGGCACTGAGGTGTACAACAAGAGAGGGCGGAGAGGGTCTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

146

Amino Acids

16.92

Weight (kDa)

8.16

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_ZPR1	PF03367	59 - 100	1.3e-10	ZPR1 zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AciI	CCGC	2 cut(s)	168, 421
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	159, 380
AcuI	CTGAAG	2 cut(s)	70, 76
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	56, 296, 322
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	7 cut(s)	44, 79, 90, 189, 236, 292, 392
AluI	AGCT	7 cut(s)	44, 79, 90, 189, 236, 292, 392
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	435
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	186, 344
ApoI	RAATTY	2 cut(s)	159, 380
Asp700I	GAANNNNTTC	2 cut(s)	100, 138
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	198, 331
BcoDI	GTCTC	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	187, 345
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	2 cut(s)	188, 346
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	118
BplI	GAGNNNNNCTC	1 cut(s)	415
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	2 cut(s)	250, 262
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	250, 262
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	198, 331
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	81, 182
Bsp1407I	TGTACA	1 cut(s)	405
Bsp1720I	GCTNAGC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	168, 421
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	435
BsrDI	GCAATG	2 cut(s)	250, 262
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	332, 394
BstDEI	CTNAG	2 cut(s)	40, 399
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 353
BstNSI	RCATGY	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	198, 331
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	3 cut(s)	198, 396, 436
Cac8I	GCNNGC	2 cut(s)	332, 394
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	183
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	40, 399
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	70, 76
EcoICRI	GAGCTC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	186
FaiI	YATR	2 cut(s)	25, 184
FatI	CATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	187, 345
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	187, 345
FspAI	RTGCGCAY	1 cut(s)	249
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	187, 345
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	198, 406
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	131, 362, 376
Hpy8I	GTNNAC	2 cut(s)	198, 406
HpyAV	CCTTC	3 cut(s)	90, 295, 316
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	186, 255, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 353
HpyF3I	CTNAG	2 cut(s)	40, 399
Hsp92II	CATG	1 cut(s)	186
HspAI	GCGC	1 cut(s)	248
LguI	GCTCTTC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	94, 139, 144, 161, 270, 348, 378
Lsp1109I	GCAGC	2 cut(s)	198, 331
MaeIII	GTNAC	1 cut(s)	308
MboII	GAAGA	4 cut(s)	68, 71, 73, 76
MhlI	GDGCHC	2 cut(s)	81, 182
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	159, 204, 368, 380
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	153, 255, 265, 394, 410, 419
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	100, 138
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	255, 401
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	186, 353
NlaIII	CATG	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	2 cut(s)	100, 138
PkrI	GCNGC	2 cut(s)	188, 346
Psp124BI	GAGCTC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	255, 401
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	2 cut(s)	187, 345
Sau96I	GGNCC	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	81, 182
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	255, 401
Sse9I	AATT	4 cut(s)	159, 204, 368, 380
SsiI	CCGC	2 cut(s)	168, 421
SstI	GAGCTC	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	159, 204, 368, 380
TatI	WGTACW	1 cut(s)	405
TscAI	CASTG	2 cut(s)	205, 403
TseI	GCWGC	2 cut(s)	186, 344
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	205, 403
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	2 cut(s)	159, 380
XceI	RCATGY	1 cut(s)	186
XmnI	GAANNNNTTC	2 cut(s)	100, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.