Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Forward (+)

5910940 .. 5952452

Gene Structure 41513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG036000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCAGCCTCTCCAAAGAAACTTCGATTGAGCCTTACAATGGGCAAGAAGAATCTTGATATTGAAAACATAAGGCTGATCACTATGGCTCTGGCGGGGACTGTTAAGAATGATAAGATAGCTGACCAAGCCTGTTACTTAGCCTCCATTGGTATGGGGAGTTTGCGGAGCTGTTGCCTCTGGTTGGAGCTATTGTTGGACTTGATCAATATGTCAACTACTTCAAAATTCATGTGCTTAGCTTTGCTGATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTCAGCTTCAGAAGATGCTGCTGCTCAGGAGCTGATGTGTGCCTAGAGTGCTGGCCGCTTATGACAACTGCTATTAAAATGACTTTGGTTTCAATGACATTCTTTGGGTATACAGTGGGCGACATGGTGTTCACTATTGGGTTTGTGATGAGAAAGCTGGAAGACAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

151

Amino Acids

17.02

Weight (kDa)

5.49

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AciI	CCGC	3 cut(s)	95, 166, 338
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	2 cut(s)	268, 274
AfiI	CCNNNNNNNGG	2 cut(s)	40, 184
AgsI	TTSAA	4 cut(s)	65, 225, 254, 375
AluBI	AGCT	8 cut(s)	122, 171, 190, 242, 277, 288, 314, 439
AluI	AGCT	8 cut(s)	122, 171, 190, 242, 277, 288, 314, 439
Alw21I	GWGCWC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	300, 303
ApoI	RAATTY	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	287, 290
BclI	TGATCA	2 cut(s)	78, 204
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	3 cut(s)	301, 304, 338
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	3 cut(s)	302, 305, 339
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	238
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 179, 209, 303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 184
BseLI	CCNNNNNNNGG	2 cut(s)	40, 184
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	287, 290
BshFI	GGCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	40, 184
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	78, 204
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	3 cut(s)	95, 166, 338
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	284
BssMI	GATC	2 cut(s)	78, 204
BssNAI	GTATAC	1 cut(s)	393
Bst1107I	GTATAC	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	103, 397
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	139, 238, 307
BstKTI	GATC	2 cut(s)	81, 207
BstMBI	GATC	2 cut(s)	78, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 330
BstV1I	GCAGC	2 cut(s)	287, 290
BstV2I	GAAGAC	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstZ17I	GTATAC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	314
CviAII	CATG	2 cut(s)	232, 406
DdeI	CTNAG	3 cut(s)	139, 238, 307
DpnI	GATC	2 cut(s)	80, 206
DpnII	GATC	2 cut(s)	78, 204
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	268, 274
EcoICRI	GAGCTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	2 cut(s)	235, 409
FaiI	YATR	9 cut(s)	71, 86, 155, 212, 233, 344, 393, 407, 454
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	231, 405
FauI	CCCGC	1 cut(s)	88
FbaI	TGATCA	2 cut(s)	78, 204
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	301, 304, 338
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	3 cut(s)	301, 304, 338
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	3 cut(s)	301, 304, 338
HaeIII	GGCC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	235, 409
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	216, 393, 414
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	56, 309
Hpy8I	GTNNAC	3 cut(s)	216, 393, 414
HpyCH4III	ACNGT	2 cut(s)	103, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 330
HpyF3I	CTNAG	3 cut(s)	139, 238, 307
Hsp92II	CATG	2 cut(s)	235, 409
Ksp22I	TGATCA	2 cut(s)	78, 204
Kzo9I	GATC	2 cut(s)	78, 204
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	3 cut(s)	168, 187, 311
LpnPI	CCDG	6 cut(s)	77, 145, 166, 294, 319, 425
Lsp1109I	GCAGC	2 cut(s)	287, 290
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	80, 206
MboI	GATC	2 cut(s)	78, 204
MboII	GAAGA	7 cut(s)	61, 266, 269, 271, 274, 306, 455
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	165, 177
MnlI	CCTC	3 cut(s)	19, 154, 188
MseI	TTAA	2 cut(s)	105, 357
MslI	CAYNNNNRTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	128, 330
NdeII	GATC	2 cut(s)	78, 204
NlaIII	CATG	2 cut(s)	235, 409
PciSI	GCTCTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	302, 305, 339
Psp124BI	GAGCTC	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	105, 357
SatI	GCNGC	3 cut(s)	301, 304, 338
Sau3AI	GATC	2 cut(s)	78, 204
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	8 cut(s)	124, 173, 192, 244, 279, 290, 316, 441
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	3 cut(s)	95, 166, 338
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	103, 397
TaqI	TCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	105, 357
Tru9I	TTAA	2 cut(s)	105, 357
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	2 cut(s)	300, 303
TspDTI	ATGAA	2 cut(s)	220, 276
TspRI	CASTG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.