Rh2AG227900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000328
Physical Location & Seq
Forward (+)
24219517 .. 24220604
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG227900.1

Sequence Viewer

Length: 282 bp
ATGATGCAGTCCATGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCACCATGGAAGATAAGACCTAACATTCAAGACAAGGCTCGCCGTCGATTCAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCGGACTGCAGACATTGACAAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.96

Weight (kDa)

12.0

Isoelectric Point (pI)

122.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 22, 261
AluI AGCT 2 cut(s) 22, 261
Alw21I GWGCWC 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 1 cut(s) 253
BanII GRGCYC 2 cut(s) 24, 47
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 72
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 124, 197
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 2 cut(s) 230, 257
BsaAI YACGTR 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 2 cut(s) 161, 204
Bse1I ACTGG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 3 cut(s) 115, 188, 248
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 4 cut(s) 17, 162, 205, 252
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 24, 47
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 243
BspEI TCCGGA 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 230, 257
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 115, 188, 248
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 167
BstSNI TACGTA 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 3 cut(s) 115, 188, 248
Cac8I GCNNGC 1 cut(s) 85
CviAII CATG 2 cut(s) 13, 51
CviJI RGCY 6 cut(s) 22, 45, 83, 247, 255, 261
CviKI_1 RGCY 6 cut(s) 22, 45, 83, 247, 255, 261
DdeI CTNAG 2 cut(s) 230, 257
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 22
Eco105I TACGTA 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 24, 47
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 24, 47
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 16, 54
FaiI YATR 4 cut(s) 14, 52, 137, 220
FatI CATG 2 cut(s) 12, 50
FokI GGATG 3 cut(s) 102, 175, 235
FriOI GRGCYC 2 cut(s) 24, 47
FspBI CTAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 255
HapII CCGG 4 cut(s) 17, 162, 205, 252
Hin1II CATG 2 cut(s) 16, 54
HinfI GANTC 2 cut(s) 93, 158
HpaII CCGG 4 cut(s) 17, 162, 205, 252
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 74, 97, 162
Hpy99I CGWCG 2 cut(s) 43, 93
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 7, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 230, 257
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 2 cut(s) 16, 54
Kpn2I TCCGGA 1 cut(s) 161
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 19, 27, 266
LpnPI CCDG 8 cut(s) 30, 82, 139, 175, 217, 218, 265, 278
LweI GCATC 2 cut(s) 124, 197
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 67, 132, 135
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 24, 47
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 2 cut(s) 46, 201
MroI TCCGGA 1 cut(s) 161
MspI CCGG 4 cut(s) 17, 162, 205, 252
MwoI GCNNNNNNNGC 1 cut(s) 13
NcoI CCATGG 1 cut(s) 50
NdeII GATC 1 cut(s) 128
NlaIII CATG 2 cut(s) 16, 54
PfeI GAWTC 1 cut(s) 93
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 128
SacI GAGCTC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 128
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 2 cut(s) 24, 47
SetI ASST 5 cut(s) 24, 67, 107, 263, 281
SfaNI GCATC 2 cut(s) 124, 197
SfcI CTRYAG 1 cut(s) 167
SnaBI TACGTA 1 cut(s) 279
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 41, 91
TfiI GAWTC 1 cut(s) 93
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.