RLG00000028740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000328
Physical Location & Seq
Forward (+)
27277891 .. 27281477
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028740

Sequence Viewer

Length: 987 bp
ATGGGTTTTGTGAGAGATTTCGAGAATGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTGGAGTGTGATGTTATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGGGTTGGCTGAGTTAAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTATTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAAAAGGACAGTGAGTTTGTGAAATTCAAGGGGCGGTTATCAGATCCAATTCTTGTCTATGAAGTTTCAGGTGGAGATGGAAAAGAAGTTTGTGGTGGTTTTTTTGTAGATAAGGTTCTGGAAATGCCTTCTAACATAGCTATTGCACATGTTACCCCAACAAAGGTTCTCGAAGATATGCCTACAATTTGCTTCGACAAGGAAACAAATATAATGAACTCAGAAACCCCTGAAGCTCAAGCGTTGGAGAAGCTTGAGAAAAGAGTGAACGAGGTTGAGCAGTATTACTTTAGGAAAGGCAGTCTGCAACCAACCACTTCGAAGGAGAAAGACGGAGATAAACATTTTAATACAATTAAGAAGCAGCGACAAGATGCATCTTGTAGGGACGCTGATGCTGCAAAAAGGATAACGGCCTCCCAAAACATCAATATTTATAGCATCAGTGCCCCTATGATGGTTGAGGTGGAGGGTGAGACTGACCCACTTGAGGATTATGCTTCTTTTGAGTTAAAGAAACATGTGAGAGGTCCAATTGCCTTGTCTGATATAAAGAGCATAAAGGTGAGGCTAAGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATTTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATAGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.97

Weight (kDa)

7.57

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 328
AclI AACGTT 1 cut(s) 158
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 2 cut(s) 546, 920
AfiI CCNNNNNNNGG 3 cut(s) 457, 751, 784
AflIII ACRYGT 2 cut(s) 442, 814
AgsI TTSAA 3 cut(s) 59, 322, 910
AluBI AGCT 4 cut(s) 176, 434, 530, 547
AluI AGCT 4 cut(s) 176, 434, 530, 547
Alw26I GTCTC 2 cut(s) 45, 764
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 708, 940
ApeKI GCWGC 2 cut(s) 658, 692
ApoI RAATTY 1 cut(s) 317
ArsI GACNNNNNNTTYG 4 cut(s) 208, 240, 293, 325
AseI ATTAAT 1 cut(s) 951
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 3 cut(s) 244, 779, 871
AsuII TTCGAA 1 cut(s) 614
AvaII GGWCC 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 745
BbvI GCAGC 2 cut(s) 670, 679
BccI CCATC 3 cut(s) 176, 365, 745
BceAI ACGGC 1 cut(s) 723
BcoDI GTCTC 2 cut(s) 45, 764
BfaI CTAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 659, 693
BlsI GCNGC 2 cut(s) 660, 694
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 824
BmsI GCATC 5 cut(s) 99, 658, 679, 680, 744
Bpu10I CCTNAGC 1 cut(s) 866
Bpu14I TTCGAA 1 cut(s) 614
BpuEI CTTGAG 4 cut(s) 516, 569, 803, 917
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 751, 784
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 37, 114
BseLI CCNNNNNNNGG 3 cut(s) 457, 751, 784
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 138, 528
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 2 cut(s) 670, 679
BshFI GGCC 2 cut(s) 710, 942
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 3 cut(s) 457, 751, 784
BsmAI GTCTC 2 cut(s) 45, 764
BsmFI GGGAC 1 cut(s) 695
BsnI GGCC 2 cut(s) 710, 942
Bsp119I TTCGAA 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 2 cut(s) 133, 337
BspACI CCGC 1 cut(s) 328
BspANI GGCC 2 cut(s) 710, 942
BspCNI CTCAG 2 cut(s) 139, 527
BspHI TCATGA 1 cut(s) 226
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 133, 337
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 2 cut(s) 230, 878
BstBI TTCGAA 1 cut(s) 614
BstDEI CTNAG 3 cut(s) 147, 514, 866
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 37, 114
BstKTI GATC 2 cut(s) 136, 340
BstMAI GTCTC 2 cut(s) 45, 764
BstMBI GATC 2 cut(s) 133, 337
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNSI RCATGY 2 cut(s) 446, 818
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 670, 679
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 710, 942
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 37, 114
BtsIMutI CAGTG 2 cut(s) 310, 745
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 824
CseI GACGC 1 cut(s) 692
CviAII CATG 5 cut(s) 205, 227, 443, 815, 976
DdeI CTNAG 3 cut(s) 147, 514, 866
DpnI GATC 2 cut(s) 135, 339
DpnII GATC 2 cut(s) 133, 337
Eam1104I CTCTTC 2 cut(s) 230, 878
EarI CTCTTC 2 cut(s) 230, 878
Eco47I GGWCC 1 cut(s) 824
Eco57I CTGAAG 2 cut(s) 546, 920
EcoT22I ATGCAT 1 cut(s) 673
FaeI CATG 5 cut(s) 208, 230, 446, 818, 979
FaqI GGGAC 1 cut(s) 695
FatI CATG 5 cut(s) 204, 226, 442, 814, 975
Fnu4HI GCNGC 2 cut(s) 659, 693
FokI GGATG 2 cut(s) 44, 121
Fsp4HI GCNGC 2 cut(s) 659, 693
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 659, 693
HaeIII GGCC 2 cut(s) 710, 942
HgaI GACGC 1 cut(s) 692
Hin1II CATG 5 cut(s) 208, 230, 446, 818, 979
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 1 cut(s) 277
HphI GGTGA 3 cut(s) 244, 779, 871
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 3 cut(s) 337, 517, 841
Hpy188III TCNNGA 5 cut(s) 22, 227, 413, 464, 934
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 432, 610
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 6 cut(s) 123, 295, 440, 601, 671, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 3 cut(s) 147, 514, 866
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 5 cut(s) 208, 230, 446, 818, 979
Kzo9I GATC 2 cut(s) 133, 337
LpnPI CCDG 5 cut(s) 232, 266, 348, 398, 537
Lsp1109I GCAGC 2 cut(s) 670, 679
LweI GCATC 5 cut(s) 99, 658, 679, 680, 744
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 135, 339
MboI GATC 2 cut(s) 133, 337
MboII GAAGA 7 cut(s) 247, 286, 479, 892, 895, 920, 922
MfeI CAATTG 2 cut(s) 59, 828
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 7 cut(s) 59, 86, 317, 342, 480, 648, 828
MmeI TCCRAC 1 cut(s) 519
Mph1103I ATGCAT 1 cut(s) 673
MseI TTAA 8 cut(s) 152, 285, 642, 651, 806, 876, 951, 968
MslI CAYNNNNRTG 1 cut(s) 857
MunI CAATTG 2 cut(s) 59, 828
MwoI GCNNNNNNNGC 1 cut(s) 692
NdeII GATC 2 cut(s) 133, 337
NlaIII CATG 5 cut(s) 208, 230, 446, 818, 979
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 2 cut(s) 446, 818
NspV TTCGAA 1 cut(s) 614
PagI TCATGA 1 cut(s) 226
PciI ACATGT 2 cut(s) 442, 814
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 660, 694
PscI ACATGT 2 cut(s) 442, 814
PshBI ATTAAT 1 cut(s) 951
Psp1406I AACGTT 1 cut(s) 158
PspPI GGNCC 1 cut(s) 824
PsrI GAACNNNNNNTAC 2 cut(s) 393, 425
PsuI RGATCY 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 8 cut(s) 152, 285, 642, 651, 806, 876, 951, 968
SatI GCNGC 2 cut(s) 659, 693
Sau3AI GATC 2 cut(s) 133, 337
Sau96I GGNCC 1 cut(s) 824
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 5 cut(s) 99, 658, 679, 680, 744
SfuI TTCGAA 1 cut(s) 614
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 4 cut(s) 531, 548, 782, 932
SmoI CTYRAG 4 cut(s) 531, 548, 782, 932
Sse9I AATT 7 cut(s) 59, 86, 317, 342, 480, 648, 828
SsiI CCGC 1 cut(s) 328
SspI AATATT 1 cut(s) 727
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 161
TaqI TCGA 5 cut(s) 21, 272, 465, 489, 614
TasI AATT 7 cut(s) 59, 86, 317, 342, 480, 648, 828
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 8 cut(s) 152, 285, 642, 651, 806, 876, 951, 968
Tru9I TTAA 8 cut(s) 152, 285, 642, 651, 806, 876, 951, 968
TscAI CASTG 2 cut(s) 310, 745
TseI GCWGC 2 cut(s) 658, 692
TspDTI ATGAA 5 cut(s) 99, 221, 369, 524, 964
TspGWI ACGGA 2 cut(s) 184, 642
TspRI CASTG 2 cut(s) 310, 745
VpaK11BI GGWCC 1 cut(s) 824
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 1 cut(s) 317
XceI RCATGY 2 cut(s) 446, 818
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.