RLG00000015899

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000328
Physical Location & Seq
Forward (+)
2318301 .. 2319764
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015899

Sequence Viewer

Length: 543 bp
ATGACTTGGGCTGTTGTGGAGCAGAGCAGTGGTGTGCCTAAAGTTGATGTCTTGAAGCAGAAATTGGAGCTTCTTGGGATTATGTTTGTGATAAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTTCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTCCCACTCAGTCTCATACCTACAGAAATGTTATGTCTCAGACTATTTTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAATCTGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTATTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

181

Amino Acids

20.63

Weight (kDa)

9.72

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 178, 294
AcuI CTGAAG 2 cut(s) 476, 485
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 70, 176
AluI AGCT 2 cut(s) 70, 176
Alw26I GTCTC 3 cut(s) 158, 231, 255
AlwI GGATC 2 cut(s) 178, 294
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 274
AseI ATTAAT 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 108, 193
BbvI GCAGC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 158, 231, 255
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 347
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 216, 337
BpiI GAAGAC 2 cut(s) 108, 193
BpuEI CTTGAG 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 3 cut(s) 168, 236, 266
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 498
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 3 cut(s) 158, 231, 255
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 134, 170, 286, 347
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 3 cut(s) 169, 235, 265
BspLI GGNNCC 2 cut(s) 216, 337
BspPI GGATC 2 cut(s) 178, 294
BsrI ACTGG 1 cut(s) 172
BssMI GATC 4 cut(s) 134, 170, 286, 347
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 177, 222, 252
BstKTI GATC 4 cut(s) 137, 173, 289, 350
BstMAI GTCTC 3 cut(s) 158, 231, 255
BstMBI GATC 4 cut(s) 134, 170, 286, 347
BstNSI RCATGY 2 cut(s) 149, 274
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 2 cut(s) 108, 193
BstX2I RGATCY 2 cut(s) 286, 347
BstYI RGATCY 2 cut(s) 286, 347
BsuRI GGCC 1 cut(s) 498
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 287
Cfr13I GGNCC 1 cut(s) 336
CviAII CATG 4 cut(s) 146, 271, 358, 532
CviJI RGCY 9 cut(s) 11, 70, 176, 183, 215, 376, 421, 498, 536
CviKI_1 RGCY 9 cut(s) 11, 70, 176, 183, 215, 376, 421, 498, 536
DdeI CTNAG 3 cut(s) 177, 222, 252
DpnI GATC 4 cut(s) 136, 172, 288, 349
DpnII GATC 4 cut(s) 134, 170, 286, 347
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 336
Eco57I CTGAAG 2 cut(s) 476, 485
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 4 cut(s) 149, 274, 361, 535
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 145, 270, 357, 531
Fnu4HI GCNGC 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 498
Hin1II CATG 4 cut(s) 149, 274, 361, 535
HinfI GANTC 2 cut(s) 317, 384
HphI GGTGA 1 cut(s) 427
Hpy188I TCNGA 4 cut(s) 134, 255, 397, 465
Hpy188III TCNNGA 3 cut(s) 52, 157, 490
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 274, 390
HpyF3I CTNAG 3 cut(s) 177, 222, 252
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 4 cut(s) 149, 274, 361, 535
Kzo9I GATC 4 cut(s) 134, 170, 286, 347
LmnI GCTCC 4 cut(s) 19, 67, 142, 220
LpnPI CCDG 4 cut(s) 123, 153, 299, 380
Lsp1109I GCAGC 1 cut(s) 286
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 297
MalI GATC 4 cut(s) 136, 172, 288, 349
MboI GATC 4 cut(s) 134, 170, 286, 347
MboII GAAGA 6 cut(s) 113, 193, 448, 451, 476, 478
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 286, 347
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 62, 195
MnlI CCTC 5 cut(s) 105, 259, 411, 435, 512
MseI TTAA 4 cut(s) 308, 432, 507, 524
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 176
MunI CAATTG 1 cut(s) 195
NdeII GATC 4 cut(s) 134, 170, 286, 347
NlaIII CATG 4 cut(s) 149, 274, 361, 535
NlaIV GGNNCC 2 cut(s) 216, 337
NspI RCATGY 2 cut(s) 149, 274
PfeI GAWTC 2 cut(s) 317, 384
PkrI GCNGC 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 216, 337
PspPI GGNCC 1 cut(s) 336
PsuI RGATCY 2 cut(s) 286, 347
PvuII CAGCTG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 4 cut(s) 308, 432, 507, 524
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 4 cut(s) 134, 170, 286, 347
Sau96I GGNCC 1 cut(s) 336
SduI GDGCHC 1 cut(s) 217
SetI ASST 6 cut(s) 72, 178, 190, 236, 308, 417
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 62, 195
SspMI CTAG 1 cut(s) 422
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 190
TaqII GACCGA 1 cut(s) 353
TasI AATT 2 cut(s) 62, 195
TfiI GAWTC 2 cut(s) 317, 384
Tru1I TTAA 4 cut(s) 308, 432, 507, 524
Tru9I TTAA 4 cut(s) 308, 432, 507, 524
TscAI CASTG 2 cut(s) 34, 287
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 374, 386, 520
TspRI CASTG 2 cut(s) 34, 287
VpaK11BI GGWCC 1 cut(s) 336
VspI ATTAAT 1 cut(s) 507
XceI RCATGY 2 cut(s) 149, 274
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.