Rmu_sc0000252.1_g000016

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000252.1
OG0000328
Physical Location & Seq
Forward (+)
76862 .. 80712
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000252.1_g000016.1.cds

Sequence Viewer

Length: 966 bp
atgcaacccattttctctctcgctcttccccgaaaccctatcgcgctcctccttcacctcactaatgctctctgtttctctttccctctcctcattgaaccaaaacctcaaaccctagaaaacgaattcgcagagctatgtggccatgcttctagtcgtggccgaaagacgtgcagcctggccttgactcgtcagaggaaggtgaagaagatggtggctgtggtgattccaccccgcactctggtcctctttagagccctagctttaattgagggagcaacaatggttgatcgaattgtgactatatctcctgttgaaattatgtaccaattaatgagagcccacacgaataatcaacttgataataatcatccactagaagagcccaaaaaggttctggacattagtgaggttcagacctatgtgataaacagtgttagagttctcttcttgaatgagaagcctcaaccaaaagctggaatcaaaggagccctccacatttgcttaatcctacttcggctattatgtacagcaccaaagagcattggtgtgcctaaagttgatgtcttgaagcagaaattggagcttcttgggattatgtttagaatagaagacaaagggagggattatggaaaatacatcagatcaggggagcatgtatggttcgtgagagagactggatcagctgagagccaacgtggaacaattgtcttccttcacggggctcccactcagtcttatacctatagaaatgttatgtctcagactattctggagaacatgcagcaacagtgggatctgtgcttgttacaaaccttaaaacaggattcagtaaaggagaatgggaccgagtggagatctatttccatgaaataccagatgaagccattgagaagctgcaaatctgatataaagagcataaaggtgaggctagggcgattaagaagaaaaggaacgctatgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

321

Amino Acids

36.51

Weight (kDa)

9.8

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 688, 804
AcoI YGGCCR 2 cut(s) 142, 160
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 2 cut(s) 326, 529
AfiI CCNNNNNNNGG 3 cut(s) 241, 476, 721
AgsI TTSAA 4 cut(s) 98, 317, 454, 571
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 6 cut(s) 136, 263, 476, 586, 686, 897
AluI AGCT 6 cut(s) 136, 263, 476, 586, 686, 897
Alw26I GTCTC 2 cut(s) 668, 765
AlwI GGATC 2 cut(s) 688, 804
AoxI GGCC 3 cut(s) 142, 160, 180
ApeKI GCWGC 3 cut(s) 174, 784, 897
ApoI RAATTY 1 cut(s) 125
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 244, 846
AsuHPI GGTGA 4 cut(s) 47, 214, 235, 937
AvaII GGWCC 2 cut(s) 244, 846
BalI TGGCCA 1 cut(s) 144
BanII GRGCYC 5 cut(s) 259, 343, 387, 493, 727
BbsI GAAGAC 2 cut(s) 618, 703
BbvI GCAGC 3 cut(s) 186, 796, 884
BccI CCATC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 668, 765
BfaI CTAG 5 cut(s) 116, 153, 260, 377, 932
BfmI CTRYAG 1 cut(s) 745
BglII AGATCT 1 cut(s) 857
BisI GCNGC 3 cut(s) 175, 785, 898
BlsI GCNGC 3 cut(s) 176, 786, 899
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 2 cut(s) 244, 846
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 244, 846
BmiI GGNNCC 3 cut(s) 490, 726, 847
BmrFI CCNGG 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 618, 703
BpmI CTGGAG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 476, 721
Bse1I ACTGG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 3 cut(s) 241, 476, 721
BseMII CTCAG 3 cut(s) 678, 746, 776
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 2 cut(s) 38, 80
BseXI GCAGC 3 cut(s) 186, 796, 884
BsgI GTGCAG 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 3 cut(s) 144, 162, 182
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 3 cut(s) 241, 476, 721
BsmAI GTCTC 2 cut(s) 668, 765
BsmFI GGGAC 1 cut(s) 859
BsnI GGCC 3 cut(s) 144, 162, 182
Bsp1286I GDGCHC 5 cut(s) 259, 343, 387, 493, 727
Bsp1407I TGTACA 1 cut(s) 527
Bsp143I GATC 5 cut(s) 289, 644, 680, 796, 857
BspACI CCGC 1 cut(s) 235
BspANI GGCC 3 cut(s) 144, 162, 182
BspCNI CTCAG 3 cut(s) 679, 745, 775
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 490, 726, 847
BspPI GGATC 2 cut(s) 688, 804
BspQI GCTCTTC 2 cut(s) 30, 375
BsrGI TGTACA 1 cut(s) 527
BsrI ACTGG 1 cut(s) 682
BssMI GATC 5 cut(s) 289, 644, 680, 796, 857
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 434, 792
Bst6I CTCTTC 3 cut(s) 30, 375, 452
BstAUI TGTACA 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 687, 732, 762
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 5 cut(s) 292, 647, 683, 799, 860
BstMAI GTCTC 2 cut(s) 668, 765
BstMBI GATC 5 cut(s) 289, 644, 680, 796, 857
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 659, 784
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 745
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 186, 796, 884
BstV2I GAAGAC 2 cut(s) 618, 703
BstX2I RGATCY 2 cut(s) 796, 857
BstYI RGATCY 2 cut(s) 796, 857
BsuRI GGCC 3 cut(s) 144, 162, 182
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 439, 797
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 244, 846
Csp6I GTAC 2 cut(s) 325, 528
CviAII CATG 4 cut(s) 146, 656, 781, 868
CviQI GTAC 2 cut(s) 325, 528
DdeI CTNAG 3 cut(s) 687, 732, 762
DpnI GATC 5 cut(s) 291, 646, 682, 798, 859
DpnII GATC 5 cut(s) 289, 644, 680, 796, 857
EaeI YGGCCR 2 cut(s) 142, 160
Eam1104I CTCTTC 3 cut(s) 30, 375, 452
EarI CTCTTC 3 cut(s) 30, 375, 452
Eco24I GRGCYC 5 cut(s) 259, 343, 387, 493, 727
Eco47I GGWCC 2 cut(s) 244, 846
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 5 cut(s) 259, 343, 387, 493, 727
FaeI CATG 4 cut(s) 149, 659, 784, 871
FaqI GGGAC 1 cut(s) 859
FatI CATG 4 cut(s) 145, 655, 780, 867
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 175, 785, 898
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 5 cut(s) 259, 343, 387, 493, 727
Fsp4HI GCNGC 3 cut(s) 175, 785, 898
FspBI CTAG 5 cut(s) 116, 153, 260, 377, 932
GlaI GCGC 1 cut(s) 45
GluI GCNGC 3 cut(s) 175, 785, 898
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 3 cut(s) 144, 162, 182
HhaI GCGC 1 cut(s) 46
Hin1II CATG 4 cut(s) 149, 659, 784, 871
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 4 cut(s) 187, 226, 480, 827
HphI GGTGA 4 cut(s) 47, 214, 235, 937
Hpy188I TCNGA 5 cut(s) 195, 417, 644, 765, 907
Hpy188III TCNNGA 5 cut(s) 398, 451, 568, 667, 773
HpyAV CCTTC 3 cut(s) 62, 193, 725
HpyCH4III ACNGT 2 cut(s) 434, 792
HpyCH4IV ACGT 2 cut(s) 170, 697
HpyCH4V TGCA 4 cut(s) 4, 174, 784, 900
HpyF3I CTNAG 3 cut(s) 687, 732, 762
HpySE526I ACGT 2 cut(s) 170, 697
Hsp92II CATG 4 cut(s) 149, 659, 784, 871
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 5 cut(s) 289, 644, 680, 796, 857
LguI GCTCTTC 2 cut(s) 30, 375
LmnI GCTCC 6 cut(s) 51, 275, 488, 583, 652, 730
Lsp1109I GCAGC 3 cut(s) 186, 796, 884
MaeI CTAG 5 cut(s) 116, 153, 260, 377, 932
MaeII ACGT 2 cut(s) 170, 697
MaeIII GTNAC 2 cut(s) 298, 807
MalI GATC 5 cut(s) 291, 646, 682, 798, 859
MboI GATC 5 cut(s) 289, 644, 680, 796, 857
MboII GAAGA 8 cut(s) 17, 217, 220, 392, 439, 623, 703, 957
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 2 cut(s) 796, 857
MhlI GDGCHC 5 cut(s) 259, 343, 387, 493, 727
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 7 cut(s) 125, 267, 294, 318, 329, 578, 705
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 181
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 5 cut(s) 266, 332, 506, 818, 941
MslI CAYNNNNRTG 2 cut(s) 548, 923
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 44
NdeII GATC 5 cut(s) 289, 644, 680, 796, 857
NlaIII CATG 4 cut(s) 149, 659, 784, 871
NlaIV GGNNCC 3 cut(s) 490, 726, 847
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 2 cut(s) 659, 784
PciSI GCTCTTC 2 cut(s) 30, 375
PfeI GAWTC 3 cut(s) 226, 480, 827
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 3 cut(s) 176, 786, 899
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 490, 726, 847
PspPI GGNCC 2 cut(s) 244, 846
PsuI RGATCY 2 cut(s) 796, 857
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 2 cut(s) 326, 529
RsaNI GTAC 2 cut(s) 325, 528
RseI CAYNNNNRTG 2 cut(s) 548, 923
SapI GCTCTTC 2 cut(s) 30, 375
SaqAI TTAA 5 cut(s) 266, 332, 506, 818, 941
SatI GCNGC 3 cut(s) 175, 785, 898
Sau3AI GATC 5 cut(s) 289, 644, 680, 796, 857
Sau96I GGNCC 2 cut(s) 244, 846
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 5 cut(s) 259, 343, 387, 493, 727
SfcI CTRYAG 1 cut(s) 745
SinI GGWCC 2 cut(s) 244, 846
SmiMI CAYNNNNRTG 2 cut(s) 548, 923
Sse9I AATT 7 cut(s) 125, 267, 294, 318, 329, 578, 705
SsiI CCGC 1 cut(s) 235
SspMI CTAG 5 cut(s) 116, 153, 260, 377, 932
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 434, 792
TaiI ACGT 2 cut(s) 173, 700
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 1 cut(s) 863
TasI AATT 7 cut(s) 125, 267, 294, 318, 329, 578, 705
TatI WGTACW 1 cut(s) 527
TfiI GAWTC 3 cut(s) 226, 480, 827
Tru1I TTAA 5 cut(s) 266, 332, 506, 818, 941
Tru9I TTAA 5 cut(s) 266, 332, 506, 818, 941
TscAI CASTG 2 cut(s) 439, 797
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 174, 784, 897
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 884, 896
TspRI CASTG 2 cut(s) 439, 797
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 244, 846
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 1 cut(s) 125
XceI RCATGY 2 cut(s) 659, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XspI CTAG 5 cut(s) 116, 153, 260, 377, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.