RLG00000032758

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000328
Physical Location & Seq
Forward (+)
18699897 .. 18702116
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032758

Sequence Viewer

Length: 471 bp
ATGAGAAGAAGGGTGAAAGGTCTGGTGCTTCGTGCTCAAGCTCGGATCTTCCTTGCATGGATAAGTTCAGGGATCAGCTTTCTTGAGAGCAAAAGATACTCTAAAAGTGCAGGCAAGAAAACAGTGGAGTACATGGTGGCATTAGTAGAGAAAACTAAAGACATGTCCGTGTCTGCAGGTAATTATGGCAGCTGCTCTTGGTACATCCAAGTTGATGGTACACTGCATGCAAATCTCAACAACTGTGTGACTGCATCTGGTAATCAGCTTTTGAGGAAGTCAATCTACACATCTAGAAATGTCATCAGCTTCCCTGCTATTGCTGTTATTTGGCAAGAAAATACTAAAACAGACAAAAATAAAATCAAAAAGGCACCAAAAGATTGTAGCTTTCAGACATCGATGTTATATGAAGCAAGGAAGGCACTGGAATTAGTTGACCTATTTCCAACCATGATGAAACAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.64

Weight (kDa)

9.94

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 373
AclWI GGATC 2 cut(s) 53, 80
AfaI GTAC 3 cut(s) 131, 203, 220
AflIII ACRYGT 1 cut(s) 162
AluBI AGCT 6 cut(s) 41, 78, 192, 268, 309, 390
AluI AGCT 6 cut(s) 41, 78, 192, 268, 309, 390
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 2 cut(s) 53, 80
ApeKI GCWGC 2 cut(s) 189, 192
AsuHPI GGTGA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 179, 201
BccI CCATC 1 cut(s) 209
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 2 cut(s) 190, 193
BlsI GCNGC 2 cut(s) 191, 194
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 21, 104
Bsa29I ATCGAT 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 401
BseGI GGATG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 432
BseXI GCAGC 2 cut(s) 179, 201
BsgI GTGCAG 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 45, 72
BspDI ATCGAT 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 2 cut(s) 53, 80
BspT107I GGYRCC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 432
BssMI GATC 2 cut(s) 45, 72
Bst4CI ACNGT 2 cut(s) 124, 245
BstC8I GCNNGC 2 cut(s) 112, 228
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 2 cut(s) 48, 75
BstMBI GATC 2 cut(s) 45, 72
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNSI RCATGY 2 cut(s) 166, 230
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 179, 201
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 401
BsuTUI ATCGAT 1 cut(s) 401
BtsCI GGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 129, 221, 425
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 112, 228
ClaI ATCGAT 1 cut(s) 401
Csp6I GTAC 3 cut(s) 130, 202, 219
CviAII CATG 5 cut(s) 57, 133, 163, 227, 454
CviJI RGCY 6 cut(s) 41, 78, 192, 268, 309, 390
CviKI_1 RGCY 6 cut(s) 41, 78, 192, 268, 309, 390
CviQI GTAC 3 cut(s) 130, 202, 219
DpnI GATC 2 cut(s) 47, 74
DpnII GATC 2 cut(s) 45, 72
FaeI CATG 5 cut(s) 60, 136, 166, 230, 457
FaiI YATR 8 cut(s) 58, 134, 164, 186, 228, 409, 411, 455
FatI CATG 5 cut(s) 56, 132, 162, 226, 453
Fnu4HI GCNGC 2 cut(s) 190, 193
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 190, 193
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 190, 193
Hin1II CATG 5 cut(s) 60, 136, 166, 230, 457
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 221, 439
Hpy188I TCNGA 2 cut(s) 45, 396
Hpy188III TCNNGA 2 cut(s) 83, 294
Hpy8I GTNNAC 2 cut(s) 221, 439
HpyAV CCTTC 2 cut(s) 3, 415
HpyCH4III ACNGT 2 cut(s) 124, 245
HpyCH4V TGCA 6 cut(s) 56, 110, 176, 226, 230, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
Hsp92II CATG 5 cut(s) 60, 136, 166, 230, 457
Kzo9I GATC 2 cut(s) 45, 72
LpnPI CCDG 7 cut(s) 8, 54, 96, 162, 243, 327, 413
Lsp1109I GCAGC 2 cut(s) 179, 201
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 47, 74
MboI GATC 2 cut(s) 45, 72
MboII GAAGA 2 cut(s) 18, 40
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 181, 431
MnlI CCTC 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 2 cut(s) 45, 72
NlaIII CATG 5 cut(s) 60, 136, 166, 230, 457
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 247
NspI RCATGY 2 cut(s) 166, 230
PaeI GCATGC 1 cut(s) 230
PciI ACATGT 1 cut(s) 162
PkrI GCNGC 2 cut(s) 191, 194
PscI ACATGT 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 3 cut(s) 131, 203, 220
RsaNI GTAC 3 cut(s) 130, 202, 219
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 2 cut(s) 190, 193
Sau3AI GATC 2 cut(s) 45, 72
SduI GDGCHC 1 cut(s) 37
SetI ASST 9 cut(s) 22, 43, 80, 181, 194, 270, 311, 392, 444
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 36, 83
SmoI CTYRAG 2 cut(s) 36, 83
SphI GCATGC 1 cut(s) 230
Sse9I AATT 2 cut(s) 181, 431
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 124, 245
TaqI TCGA 1 cut(s) 401
TasI AATT 2 cut(s) 181, 431
TatI WGTACW 1 cut(s) 129
TscAI CASTG 3 cut(s) 129, 228, 432
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 189, 192
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 426
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 3 cut(s) 129, 228, 432
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 2 cut(s) 166, 230
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.