Rh6CG173900

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000328
Physical Location & Seq
Forward (+)
24465860 .. 24498845
32986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG173900.1

Sequence Viewer

Length: 543 bp
ATGAGGGGCAAGGTAACAAAGGCGGAACTGGTCGCTGGAGTTGCATCGCATTTTGCATCTGCTCTTATTGACACCATGCTTTCCATTCCAAAGAATCTCTTGATTCAAAATGTGCGCAAAAAGGTTCTGGACATTAGTGAGGTTCAGACCTATGTGATAAACAGTGTTAGAGTTCTCTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCTCCACATTTGCTTAATCCTACTTCGGCTATTATGTACAGCACCAAAGAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTTTGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGCCGGGGCTCCCACTCAACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

180

Amino Acids

20.53

Weight (kDa)

9.74

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 40 - 85 9.5e-10 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 206
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 355, 444
AcoI YGGCCR 1 cut(s) 388
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 107, 184
AluBI AGCT 3 cut(s) 206, 353, 537
AluI AGCT 3 cut(s) 206, 353, 537
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 2 cut(s) 355, 444
AoxI GGCC 2 cut(s) 191, 388
ApeKI GCWGC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 486
BanII GRGCYC 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 285, 370
BbvI GCAGC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 403
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 335
BglII AGATCT 1 cut(s) 497
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 2 cut(s) 397, 487
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 2 cut(s) 53, 65
BpiI GAAGAC 2 cut(s) 285, 370
BpmI CTGGAG 2 cut(s) 57, 434
BpuMI CCSGG 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 33, 349
BseDI CCNNGG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 33, 349
BseX3I CGGCCG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 436
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 193, 390
BsiEI CGRYCG 1 cut(s) 391
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 2 cut(s) 193, 390
Bsp1286I GDGCHC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 311, 347, 436, 497
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 193, 390
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 397, 487
BspPI GGATC 2 cut(s) 355, 444
BsrGI TGTACA 1 cut(s) 257
BsrI ACTGG 2 cut(s) 33, 349
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 4 cut(s) 311, 347, 436, 497
Bst4CI ACNGT 2 cut(s) 164, 432
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 314, 350, 439, 500
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 311, 347, 436, 497
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 326, 424
BstSCI CCNGG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 2 cut(s) 285, 370
BstX2I RGATCY 2 cut(s) 436, 497
BstYI RGATCY 2 cut(s) 436, 497
BstZI CGGCCG 1 cut(s) 388
BsuRI GGCC 2 cut(s) 193, 390
BtgZI GCGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 169, 437
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 258
CviAII CATG 4 cut(s) 76, 323, 421, 508
CviJI RGCY 9 cut(s) 193, 206, 250, 353, 360, 390, 396, 526, 537
CviKI_1 RGCY 9 cut(s) 193, 206, 250, 353, 360, 390, 396, 526, 537
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 354
DpnI GATC 4 cut(s) 313, 349, 438, 499
DpnII GATC 4 cut(s) 311, 347, 436, 497
EaeI YGGCCR 1 cut(s) 388
EagI CGGCCG 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 486
Eco52I CGGCCG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 398
FaeI CATG 4 cut(s) 79, 326, 424, 511
FaiI YATR 8 cut(s) 77, 153, 256, 297, 324, 328, 422, 509
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 499
FatI CATG 4 cut(s) 75, 322, 420, 507
Fnu4HI GCNGC 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 425
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 425
GsuI CTGGAG 2 cut(s) 57, 434
HaeIII GGCC 2 cut(s) 193, 390
HapII CCGG 1 cut(s) 391
HhaI GCGC 1 cut(s) 117
Hin1II CATG 4 cut(s) 79, 326, 424, 511
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 5 cut(s) 94, 103, 210, 219, 467
HpaII CCGG 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 147, 311
Hpy188III TCNNGA 4 cut(s) 100, 128, 181, 413
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 164, 432
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 44, 56, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 4 cut(s) 79, 326, 424, 511
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 311, 347, 436, 497
LmnI GCTCC 2 cut(s) 319, 401
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 53, 65
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 13, 447
MalI GATC 4 cut(s) 313, 349, 438, 499
MboI GATC 4 cut(s) 311, 347, 436, 497
MboII GAAGA 3 cut(s) 169, 290, 370
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 436, 497
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 6 cut(s) 133, 183, 204, 233, 282, 409
MseI TTAA 2 cut(s) 236, 458
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 392
NdeII GATC 4 cut(s) 311, 347, 436, 497
NlaIII CATG 4 cut(s) 79, 326, 424, 511
NlaIV GGNNCC 2 cut(s) 397, 487
NsbI TGCGCA 1 cut(s) 116
NspI RCATGY 2 cut(s) 326, 424
PceI AGGCCT 1 cut(s) 193
PfeI GAWTC 4 cut(s) 94, 103, 210, 467
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 426
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 397, 487
PspPI GGNCC 1 cut(s) 486
PsuI RGATCY 2 cut(s) 436, 497
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 236, 458
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 4 cut(s) 311, 347, 436, 497
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 398
SetI ASST 9 cut(s) 15, 126, 144, 152, 208, 355, 367, 458, 539
SfaNI GCATC 2 cut(s) 53, 65
SinI GGWCC 1 cut(s) 486
Sse9I AATT 1 cut(s) 372
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 23
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 164, 432
TaiI ACGT 1 cut(s) 367
TaqII GACCGA 1 cut(s) 503
TasI AATT 1 cut(s) 372
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 4 cut(s) 94, 103, 210, 467
Tru1I TTAA 2 cut(s) 236, 458
Tru9I TTAA 2 cut(s) 236, 458
TscAI CASTG 2 cut(s) 169, 437
TseI GCWGC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 524, 536
TspRI CASTG 2 cut(s) 169, 437
Van91I CCANNNNNTGG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 486
XceI RCATGY 2 cut(s) 326, 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.