Rmu_sc0006598.1_g000013

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006598.1
OG0000328
Physical Location & Seq
Reverse (-)
42242 .. 49637
7396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006598.1_g000013.1.cds

Sequence Viewer

Length: 660 bp
atgagtgtttgggagatttcaatgggttttgtgagagatttcgagaacgtggatgaggcatttggtagtagagacattcaattgagttgggttgatgtaaggtatgaattggagtgtgatgttatggggatgcctttggagtgcaagttttgtgatcttgagttggctgagttgaaaacgttgcctagaagtagagctgatgatggcttgttttccgtggaaagcatgaagtcgcaaacaagaggtcatgaggtgaagaggctgttctggggaaaagtagataagatcttatctctgttcaaggattcttgtaaggagttggttgatctccagacacagattgatggaaagttattaaatcttaagaaggatgtttctgtacaagattctaagcaccgcaagacacttactgaggggccttacacgcttactcaacacgaggaactggccaacaatacaataaaagctctatgcaacgctgacacctcagaaggagtttttgttgctgggaaggatgtttcactgccagaaactaatattaggaaccccagggttccccttagaaatattggtggattaagagtgtcacagcgcccactccttgccttctttgcaggacgcatgcatggcagagtccgcccaatacttctcaagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

219

Amino Acids

24.93

Weight (kDa)

6.91

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 397, 637
AclI AACGTT 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 447
AfaI GTAC 2 cut(s) 381, 656
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 4 cut(s) 21, 80, 175, 301
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 2 cut(s) 197, 467
AluI AGCT 2 cut(s) 197, 467
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 2 cut(s) 416, 447
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 265
BalI TGGCCA 1 cut(s) 449
BauI CACGAG 1 cut(s) 437
BccI CCATC 2 cut(s) 197, 338
BciT130I CCWGG 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 186, 658
BfoI RGCGCY 1 cut(s) 595
BfrI CTTAAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 417, 545, 555
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 179, 635
BsaJI CCNNGG 3 cut(s) 216, 548, 549
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 486, 516
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 3 cut(s) 216, 548, 549
BseGI GGATG 4 cut(s) 58, 135, 376, 520
BseMII CTCAG 3 cut(s) 159, 402, 501
BseNI ACTGG 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 2 cut(s) 418, 449
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 2 cut(s) 418, 449
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 3 cut(s) 154, 285, 325
BspACI CCGC 2 cut(s) 397, 637
BspANI GGCC 2 cut(s) 418, 449
BspCNI CTCAG 3 cut(s) 160, 403, 500
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 417, 545, 555
BspTI CTTAAG 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 216, 548, 549
BssMI GATC 3 cut(s) 154, 285, 325
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 550
Bst6I CTCTTC 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 5 cut(s) 168, 390, 411, 487, 560
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 58, 135, 376, 520
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 3 cut(s) 157, 288, 328
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 154, 285, 325
BstMWI GCNNNNNNNGC 4 cut(s) 424, 611, 627, 636
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 2 cut(s) 418, 449
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 58, 135, 376, 520
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 623
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 627
Csp6I GTAC 2 cut(s) 380, 655
CviAII CATG 4 cut(s) 226, 248, 622, 626
CviJI RGCY 7 cut(s) 167, 197, 207, 262, 418, 449, 467
CviKI_1 RGCY 7 cut(s) 167, 197, 207, 262, 418, 449, 467
CviQI GTAC 2 cut(s) 380, 655
DdeI CTNAG 5 cut(s) 168, 390, 411, 487, 560
DpnI GATC 3 cut(s) 156, 287, 327
DpnII GATC 3 cut(s) 154, 285, 325
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 627
FaeI CATG 4 cut(s) 229, 251, 625, 629
FaiI YATR 7 cut(s) 105, 125, 227, 249, 472, 623, 627
FatI CATG 4 cut(s) 225, 247, 621, 625
FokI GGATG 4 cut(s) 65, 142, 383, 527
FspBI CTAG 2 cut(s) 186, 658
GlaI GCGC 1 cut(s) 593
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 2 cut(s) 418, 449
HgaI GACGC 1 cut(s) 627
HhaI GCGC 1 cut(s) 594
Hin1II CATG 4 cut(s) 229, 251, 625, 629
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HinfI GANTC 3 cut(s) 305, 386, 633
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 4 cut(s) 43, 158, 248, 331
HpyAV CCTTC 4 cut(s) 361, 485, 505, 616
HpyCH4IV ACGT 2 cut(s) 48, 179
HpyCH4V TGCA 4 cut(s) 144, 474, 614, 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 611, 627, 636
HpyF3I CTNAG 5 cut(s) 168, 390, 411, 487, 560
HpySE526I ACGT 2 cut(s) 48, 179
Hsp92II CATG 4 cut(s) 229, 251, 625, 629
HspAI GCGC 1 cut(s) 592
Kzo9I GATC 3 cut(s) 154, 285, 325
LpnPI CCDG 8 cut(s) 253, 344, 431, 492, 535, 540, 562, 600
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 186, 658
MaeII ACGT 2 cut(s) 48, 179
MaeIII GTNAC 1 cut(s) 585
MalI GATC 3 cut(s) 156, 287, 327
MboI GATC 3 cut(s) 154, 285, 325
MboII GAAGA 1 cut(s) 268
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 2 cut(s) 80, 107
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 642
MnlI CCTC 7 cut(s) 49, 236, 244, 252, 406, 433, 496
Mox20I TGGCCA 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 627
MscI TGGCCA 1 cut(s) 449
MseI TTAA 3 cut(s) 356, 363, 578
Msp20I TGGCCA 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 550
MunI CAATTG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 4 cut(s) 424, 611, 627, 636
NdeII GATC 3 cut(s) 154, 285, 325
NlaIII CATG 4 cut(s) 229, 251, 625, 629
NlaIV GGNNCC 3 cut(s) 417, 545, 555
NmuCI GTSAC 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 625
PaeI GCATGC 1 cut(s) 625
PagI TCATGA 1 cut(s) 247
PasI CCCWGGG 1 cut(s) 549
PfeI GAWTC 2 cut(s) 305, 386
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Psp1406I AACGTT 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 3 cut(s) 417, 545, 555
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 2 cut(s) 381, 656
RsaNI GTAC 2 cut(s) 380, 655
SaqAI TTAA 3 cut(s) 356, 363, 578
Sau3AI GATC 3 cut(s) 154, 285, 325
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 1 cut(s) 550
SetI ASST 8 cut(s) 51, 104, 182, 199, 247, 255, 469, 488
SfaNI GCATC 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 158, 362, 650
SmoI CTYRAG 3 cut(s) 158, 362, 650
SphI GCATGC 1 cut(s) 625
Sse9I AATT 2 cut(s) 80, 107
SsiI CCGC 2 cut(s) 397, 637
SspI AATATT 2 cut(s) 538, 568
SspMI CTAG 2 cut(s) 186, 658
StyD4I CCNGG 1 cut(s) 548
TaiI ACGT 2 cut(s) 51, 182
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 80, 107
TatI WGTACW 2 cut(s) 379, 654
TfiI GAWTC 2 cut(s) 305, 386
Tru1I TTAA 3 cut(s) 356, 363, 578
Tru9I TTAA 3 cut(s) 356, 363, 578
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 1 cut(s) 585
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 120, 242
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 528
Vha464I CTTAAG 1 cut(s) 362
XceI RCATGY 1 cut(s) 625
XspI CTAG 2 cut(s) 186, 658
ZrmI AGTACT 1 cut(s) 656
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.