Rmu_sc0003833.1_g000002

Mitochondrial inner membrane protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003833.1
Physical Location & Seq
Reverse (-)
4210 .. 5269
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003833.1_g000002.1.cds

Sequence Viewer

Length: 354 bp
atggctgagaaagttccgtcttttcaaaatggtggagctctttggtttactgatctcacaactccagagagcatgttgatccttccaattctgacagcaatgacattctggatcacagtcgaggtttggaaaggaaatcttgttgcacaaactatgaaaacctattctagaatcctagctgtcattgaaattccagttatgatgagcttcctcaaggcactcctttatgtctacagtgccatcgcacaagagaacataaagcagtgggcggcaaagagtcggaactcatatacccaagagcaacttgatgaggtgcggattgaagcggctgactacttgcagactttgctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.35

Weight (kDa)

5.02

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AciI CCGC 3 cut(s) 269, 316, 326
AclWI GGATC 2 cut(s) 73, 119
AcsI RAATTY 1 cut(s) 189
AgsI TTSAA 3 cut(s) 26, 188, 323
AluBI AGCT 3 cut(s) 38, 179, 207
AluI AGCT 3 cut(s) 38, 179, 207
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 2 cut(s) 73, 119
ApoI RAATTY 1 cut(s) 189
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 248
BfaI CTAG 2 cut(s) 168, 176
BfmI CTRYAG 2 cut(s) 232, 350
BisI GCNGC 2 cut(s) 270, 327
BlsI GCNGC 2 cut(s) 271, 328
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 52, 78, 111
BspACI CCGC 3 cut(s) 269, 316, 326
BspPI GGATC 2 cut(s) 73, 119
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 194
BssMI GATC 3 cut(s) 52, 78, 111
Bst4CI ACNGT 2 cut(s) 118, 236
BstAPI GCANNNNNTGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 3 cut(s) 55, 81, 114
BstMBI GATC 3 cut(s) 52, 78, 111
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 76
BstSFI CTRYAG 2 cut(s) 232, 350
BtgZI GCGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 241, 269
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 5, 38, 179, 207, 329
CviKI_1 RGCY 5 cut(s) 5, 38, 179, 207, 329
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 54, 80, 113
DpnII GATC 3 cut(s) 52, 78, 111
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 76
FaiI YATR 8 cut(s) 74, 155, 200, 228, 257, 289, 291, 352
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 288, 320
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 270, 327
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 270, 327
FspBI CTAG 2 cut(s) 168, 176
GluI GCNGC 2 cut(s) 270, 327
GsuI CTGGAG 1 cut(s) 48
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 171, 277
Hpy166II GTNNAC 2 cut(s) 48, 232
Hpy188I TCNGA 2 cut(s) 93, 282
Hpy188III TCNNGA 3 cut(s) 65, 109, 168
Hpy8I GTNNAC 2 cut(s) 48, 232
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 118, 236
HpyCH4V TGCA 2 cut(s) 146, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 3 cut(s) 52, 78, 111
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 3 cut(s) 78, 94, 207
MaeI CTAG 2 cut(s) 168, 176
MalI GATC 3 cut(s) 54, 80, 113
MboI GATC 3 cut(s) 52, 78, 111
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 87, 189
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 3 cut(s) 115, 221, 304
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 3 cut(s) 52, 78, 111
NlaIII CATG 1 cut(s) 76
NspI RCATGY 1 cut(s) 76
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 271, 328
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 40
SacI GAGCTC 1 cut(s) 40
SatI GCNGC 2 cut(s) 270, 327
Sau3AI GATC 3 cut(s) 52, 78, 111
SchI GAGTC 1 cut(s) 286
SduI GDGCHC 1 cut(s) 40
SetI ASST 6 cut(s) 40, 126, 164, 181, 209, 315
SfcI CTRYAG 2 cut(s) 232, 350
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 87, 189
SsiI CCGC 3 cut(s) 269, 316, 326
SspMI CTAG 2 cut(s) 168, 176
SstI GAGCTC 1 cut(s) 40
TaaI ACNGT 2 cut(s) 118, 236
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 87, 189
TauI GCSGC 2 cut(s) 272, 329
TfiI GAWTC 1 cut(s) 171
TscAI CASTG 2 cut(s) 241, 269
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 2 cut(s) 241, 269
XapI RAATTY 1 cut(s) 189
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 168, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.