Rh1DG093300

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000328
Physical Location & Seq
Reverse (-)
17522766 .. 17524050
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG093300.1

Sequence Viewer

Length: 204 bp
ATGATAGCACAATTTGATTTGAAGGGCATGAAGGTGAGGCTTGAGGCGACTAAGAAGACGAGGAATTATGTGCTCAAGTATTTGAAGAATGATGTTGCCGATCTTCTCAAGAGTGGCCTTGATATTAATGCATATGGAAGGGATTTTGCTCTTCCACAAGCTCCCGCAGAGGCCCAATCACAGCTTCATGTGGCGCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

67

Amino Acids

7.5

Weight (kDa)

9.4

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AciI CCGC 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 194
AgsI TTSAA 2 cut(s) 22, 85
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 2 cut(s) 161, 184
AluI AGCT 2 cut(s) 161, 184
Alw21I GWGCWC 1 cut(s) 75
AoxI GGCC 2 cut(s) 115, 171
AseI ATTAAT 1 cut(s) 126
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 46
BanI GGYRCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 59, 62, 92
BsaHI GRCGYC 1 cut(s) 194
BshFI GGCC 2 cut(s) 117, 173
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 75
BsnI GGCC 2 cut(s) 117, 173
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 117, 173
BspLI GGNNCC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 193
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 117, 173
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 28, 188
CviJI RGCY 5 cut(s) 40, 117, 161, 173, 184
CviKI_1 RGCY 5 cut(s) 40, 117, 161, 173, 184
DdeI CTNAG 1 cut(s) 51
DinI GGCGCC 1 cut(s) 195
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
FaeI CATG 2 cut(s) 31, 191
FaiI YATR 5 cut(s) 29, 69, 133, 135, 189
FatI CATG 2 cut(s) 27, 187
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 133
GlaI GCGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 2 cut(s) 117, 173
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 31, 191
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 16, 25, 132
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 31, 191
HspAI GCGC 1 cut(s) 194
KasI GGCGCC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 166
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 67, 95, 97, 143
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 2 cut(s) 11, 64
Mly113I GGCGCC 1 cut(s) 194
MnlI CCTC 4 cut(s) 30, 37, 54, 163
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 32
NarI GGCGCC 1 cut(s) 194
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 31, 191
NlaIV GGNNCC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 156
PluTI GGCGCC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 36, 163, 186
SfoI GGCGCC 1 cut(s) 195
SgeI CNNG 9 cut(s) 40, 53, 72, 88, 121, 131, 170, 176, 200
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 3 cut(s) 41, 74, 107
SmoI CTYRAG 3 cut(s) 41, 74, 107
Sse9I AATT 2 cut(s) 11, 64
SsiI CCGC 1 cut(s) 165
SspDI GGCGCC 1 cut(s) 193
TasI AATT 2 cut(s) 11, 64
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 44, 176
VspI ATTAAT 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.