DNA-directed RNA polymerases I, II, and III subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 209 - 249 | 4.1e-10 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 704 |
| AccB1I | GGYRCC | 1 cut(s) | 704 |
| AccI | GTMKAC | 1 cut(s) | 890 |
| AciI | CCGC | 1 cut(s) | 811 |
| AclWI | GGATC | 3 cut(s) | 715, 779, 1116 |
| AcsI | RAATTY | 3 cut(s) | 316, 1057, 1126 |
| AcuI | CTGAAG | 2 cut(s) | 9, 174 |
| AdeI | CACNNNGTG | 1 cut(s) | 398 |
| AfaI | GTAC | 5 cut(s) | 169, 706, 748, 898, 930 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 375, 544, 624 |
| AgsI | TTSAA | 1 cut(s) | 1003 |
| AhlI | ACTAGT | 2 cut(s) | 752, 893 |
| AjnI | CCWGG | 1 cut(s) | 374 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1137, 1169 |
| AleI | CACNNNNGTG | 1 cut(s) | 866 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 792, 824 |
| Alw26I | GTCTC | 3 cut(s) | 383, 497, 764 |
| AlwI | GGATC | 3 cut(s) | 715, 779, 1116 |
| Ama87I | CYCGRG | 1 cut(s) | 1035 |
| AoxI | GGCC | 2 cut(s) | 776, 1068 |
| ApeKI | GCWGC | 4 cut(s) | 157, 764, 833, 1084 |
| ApoI | RAATTY | 3 cut(s) | 316, 1057, 1126 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1225 |
| Asp718I | GGTACC | 1 cut(s) | 704 |
| AsuNHI | GCTAGC | 1 cut(s) | 565 |
| AvaI | CYCGRG | 1 cut(s) | 1035 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 696, 729 |
| BanI | GGYRCC | 1 cut(s) | 704 |
| BanII | GRGCYC | 1 cut(s) | 634 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 929, 961 |
| BbsI | GAAGAC | 1 cut(s) | 264 |
| BbvCI | CCTCAGC | 1 cut(s) | 417 |
| BbvI | GCAGC | 4 cut(s) | 169, 751, 845, 1096 |
| BccI | CCATC | 2 cut(s) | 913, 925 |
| BciT130I | CCWGG | 1 cut(s) | 376 |
| BciVI | GTATCC | 2 cut(s) | 545, 1104 |
| BclI | TGATCA | 1 cut(s) | 1165 |
| BcoDI | GTCTC | 3 cut(s) | 383, 497, 764 |
| BcuI | ACTAGT | 2 cut(s) | 752, 893 |
| BfaI | CTAG | 5 cut(s) | 354, 566, 753, 858, 894 |
| BfmI | CTRYAG | 1 cut(s) | 765 |
| BfuI | GTATCC | 2 cut(s) | 545, 1104 |
| BisI | GCNGC | 4 cut(s) | 158, 765, 834, 1085 |
| BlpI | GCTNAGC | 1 cut(s) | 1197 |
| BlsI | GCNGC | 4 cut(s) | 159, 766, 835, 1086 |
| BmcAI | AGTACT | 2 cut(s) | 169, 898 |
| Bme1390I | CCNGG | 1 cut(s) | 376 |
| BmeT110I | CYCGRG | 1 cut(s) | 1035 |
| BmiI | GGNNCC | 2 cut(s) | 411, 706 |
| BmrFI | CCNGG | 1 cut(s) | 376 |
| BmrI | ACTGGG | 1 cut(s) | 561 |
| BmsI | GCATC | 5 cut(s) | 29, 199, 305, 499, 1071 |
| BmtI | GCTAGC | 1 cut(s) | 569 |
| BmuI | ACTGGG | 1 cut(s) | 561 |
| BpiI | GAAGAC | 1 cut(s) | 264 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 616, 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 417 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1197 |
| BpuEI | CTTGAG | 1 cut(s) | 1073 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1167 |
| BsaI | GGTCTC | 1 cut(s) | 497 |
| BsaJI | CCNNGG | 1 cut(s) | 93 |
| BsaWI | WCCGGW | 1 cut(s) | 971 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 106, 136, 619, 649, 883, 913 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 375, 544, 624 |
| Bse118I | RCCGGY | 3 cut(s) | 79, 871, 1070 |
| Bse1I | ACTGG | 3 cut(s) | 12, 268, 556 |
| Bse3DI | GCAATG | 1 cut(s) | 442 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1167 |
| BseBI | CCWGG | 1 cut(s) | 376 |
| BseDI | CCNNGG | 1 cut(s) | 93 |
| BseGI | GGATG | 4 cut(s) | 103, 242, 514, 1045 |
| BseJI | GATNNNNATC | 1 cut(s) | 1167 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 375, 544, 624 |
| BseMI | GCAATG | 1 cut(s) | 442 |
| BseMII | CTCAG | 3 cut(s) | 225, 245, 431 |
| BseNI | ACTGG | 3 cut(s) | 12, 268, 556 |
| BseRI | GAGGAG | 6 cut(s) | 59, 62, 114, 640, 698, 891 |
| BseXI | GCAGC | 4 cut(s) | 169, 751, 845, 1096 |
| BshFI | GGCC | 2 cut(s) | 778, 1070 |
| BshNI | GGYRCC | 1 cut(s) | 704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1035 |
| BsiSI | CCGG | 4 cut(s) | 80, 872, 972, 1071 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 375, 544, 624 |
| BsmAI | GTCTC | 3 cut(s) | 383, 497, 764 |
| BsmI | GAATGC | 1 cut(s) | 526 |
| BsnI | GGCC | 2 cut(s) | 778, 1070 |
| Bso31I | GGTCTC | 1 cut(s) | 497 |
| BsoBI | CYCGRG | 1 cut(s) | 1035 |
| Bsp1286I | GDGCHC | 1 cut(s) | 634 |
| Bsp143I | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1197 |
| Bsp19I | CCATGG | 1 cut(s) | 93 |
| BspACI | CCGC | 1 cut(s) | 811 |
| BspANI | GGCC | 2 cut(s) | 778, 1070 |
| BspCNI | CTCAG | 3 cut(s) | 226, 246, 430 |
| BspLI | GGNNCC | 2 cut(s) | 411, 706 |
| BspMAI | CTGCAG | 1 cut(s) | 769 |
| BspOI | GCTAGC | 1 cut(s) | 569 |
| BspPI | GGATC | 3 cut(s) | 715, 779, 1116 |
| BspT107I | GGYRCC | 1 cut(s) | 704 |
| BspTNI | GGTCTC | 1 cut(s) | 497 |
| BsrDI | GCAATG | 1 cut(s) | 442 |
| BsrFI | RCCGGY | 3 cut(s) | 79, 871, 1070 |
| BsrI | ACTGG | 3 cut(s) | 12, 268, 556 |
| BssAI | RCCGGY | 3 cut(s) | 79, 871, 1070 |
| BssECI | CCNNGG | 1 cut(s) | 93 |
| BssMI | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| BssT1I | CCWWGG | 1 cut(s) | 93 |
| Bst2UI | CCWGG | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 2 cut(s) | 491, 612 |
| Bst6I | CTCTTC | 2 cut(s) | 932, 1114 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 830, 1181, 1244 |
| BstC8I | GCNNGC | 9 cut(s) | 81, 461, 567, 762, 831, 869, 873, 1032, 1072 |
| BstDEI | CTNAG | 6 cut(s) | 234, 254, 417, 422, 955, 1197 |
| BstDSI | CCRYGG | 1 cut(s) | 93 |
| BstF5I | GGATG | 4 cut(s) | 103, 242, 514, 1045 |
| BstKTI | GATC | 6 cut(s) | 622, 655, 723, 787, 1111, 1168 |
| BstMAI | GTCTC | 3 cut(s) | 383, 497, 764 |
| BstMBI | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 89, 293, 575, 810, 830, 1181, 1244 |
| BstNI | CCWGG | 1 cut(s) | 376 |
| BstNSI | RCATGY | 1 cut(s) | 1034 |
| BstSCI | CCNGG | 1 cut(s) | 374 |
| BstSFI | CTRYAG | 1 cut(s) | 765 |
| BstV1I | GCAGC | 4 cut(s) | 169, 751, 845, 1096 |
| BstV2I | GAAGAC | 1 cut(s) | 264 |
| BstX2I | RGATCY | 1 cut(s) | 784 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1104 |
| BstYI | RGATCY | 1 cut(s) | 784 |
| BsuI | GTATCC | 2 cut(s) | 545, 1104 |
| BsuRI | GGCC | 2 cut(s) | 778, 1070 |
| BtgI | CCRYGG | 1 cut(s) | 93 |
| BtsCI | GGATG | 4 cut(s) | 103, 242, 514, 1045 |
| BtsI | GCAGTG | 1 cut(s) | 521 |
| BtsIMutI | CAGTG | 2 cut(s) | 5, 521 |
| Cac8I | GCNNGC | 9 cut(s) | 81, 461, 567, 762, 831, 869, 873, 1032, 1072 |
| Cfr10I | RCCGGY | 3 cut(s) | 79, 871, 1070 |
| Csp6I | GTAC | 5 cut(s) | 168, 705, 747, 897, 929 |
| CviAII | CATG | 7 cut(s) | 94, 604, 845, 1031, 1075, 1112, 1244 |
| CviQI | GTAC | 5 cut(s) | 168, 705, 747, 897, 929 |
| DdeI | CTNAG | 6 cut(s) | 234, 254, 417, 422, 955, 1197 |
| DpnI | GATC | 6 cut(s) | 621, 654, 722, 786, 1110, 1167 |
| DpnII | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| DraI | TTTAAA | 1 cut(s) | 673 |
| DraIII | CACNNNGTG | 1 cut(s) | 398 |
| Eam1104I | CTCTTC | 2 cut(s) | 932, 1114 |
| EarI | CTCTTC | 2 cut(s) | 932, 1114 |
| Eco130I | CCWWGG | 1 cut(s) | 93 |
| Eco24I | GRGCYC | 1 cut(s) | 634 |
| Eco31I | GGTCTC | 1 cut(s) | 497 |
| Eco57I | CTGAAG | 2 cut(s) | 9, 174 |
| Eco88I | CYCGRG | 1 cut(s) | 1035 |
| EcoRII | CCWGG | 1 cut(s) | 374 |
| EcoT14I | CCWWGG | 1 cut(s) | 93 |
| EcoT38I | GRGCYC | 1 cut(s) | 634 |
| ErhI | CCWWGG | 1 cut(s) | 93 |
| FaeI | CATG | 7 cut(s) | 97, 607, 848, 1034, 1078, 1115, 1247 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 157, 189, 1164, 1196, 1210, 1242 |
| FatI | CATG | 7 cut(s) | 93, 603, 844, 1030, 1074, 1111, 1243 |
| FbaI | TGATCA | 1 cut(s) | 1165 |
| FblI | GTMKAC | 1 cut(s) | 890 |
| Fnu4HI | GCNGC | 4 cut(s) | 158, 765, 834, 1085 |
| FokI | GGATG | 4 cut(s) | 110, 229, 521, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 634 |
| Fsp4HI | GCNGC | 4 cut(s) | 158, 765, 834, 1085 |
| FspBI | CTAG | 5 cut(s) | 354, 566, 753, 858, 894 |
| GluI | GCNGC | 4 cut(s) | 158, 765, 834, 1085 |
| HaeIII | GGCC | 2 cut(s) | 778, 1070 |
| HapII | CCGG | 4 cut(s) | 80, 872, 972, 1071 |
| Hin1II | CATG | 7 cut(s) | 97, 607, 848, 1034, 1078, 1115, 1247 |
| HindIII | AAGCTT | 1 cut(s) | 827 |
| HinfI | GANTC | 2 cut(s) | 311, 983 |
| HpaII | CCGG | 4 cut(s) | 80, 872, 972, 1071 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 891, 929 |
| Hpy188I | TCNGA | 5 cut(s) | 28, 43, 235, 505, 624 |
| Hpy188III | TCNNGA | 7 cut(s) | 196, 206, 386, 538, 650, 921, 1037 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 891, 929 |
| Hpy99I | CGWCG | 4 cut(s) | 35, 38, 1139, 1142 |
| HpyAV | CCTTC | 2 cut(s) | 198, 423 |
| HpyCH4III | ACNGT | 2 cut(s) | 491, 612 |
| HpyCH4IV | ACGT | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 6 cut(s) | 296, 526, 767, 833, 1030, 1084 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 89, 293, 575, 810, 830, 1181, 1244 |
| HpyF3I | CTNAG | 6 cut(s) | 234, 254, 417, 422, 955, 1197 |
| HpySE526I | ACGT | 1 cut(s) | 36 |
| Hsp92II | CATG | 7 cut(s) | 97, 607, 848, 1034, 1078, 1115, 1247 |
| KpnI | GGTACC | 1 cut(s) | 708 |
| KroI | GCCGGC | 3 cut(s) | 79, 871, 1070 |
| KroNI | GCCGGC | 3 cut(s) | 81, 873, 1072 |
| Ksp22I | TGATCA | 1 cut(s) | 1165 |
| Kzo9I | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| LmnI | GCTCC | 5 cut(s) | 190, 284, 432, 555, 685 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 751, 845, 1096 |
| LweI | GCATC | 5 cut(s) | 29, 199, 305, 499, 1071 |
| MaeI | CTAG | 5 cut(s) | 354, 566, 753, 858, 894 |
| MaeII | ACGT | 1 cut(s) | 36 |
| MaeIII | GTNAC | 7 cut(s) | 3, 260, 359, 442, 547, 571, 612 |
| MalI | GATC | 6 cut(s) | 621, 654, 722, 786, 1110, 1167 |
| MboI | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| MflI | RGATCY | 1 cut(s) | 784 |
| MhlI | GDGCHC | 1 cut(s) | 634 |
| MluCI | AATT | 5 cut(s) | 316, 1057, 1126, 1145, 1221 |
| MlyI | GAGTC | 1 cut(s) | 320 |
| MmeI | TCCRAC | 4 cut(s) | 137, 262, 754, 1121 |
| MroNI | GCCGGC | 3 cut(s) | 79, 871, 1070 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1225 |
| MseI | TTAA | 3 cut(s) | 672, 951, 1249 |
| MslI | CAYNNNNRTG | 2 cut(s) | 866, 1079 |
| MspA1I | CMGCKG | 1 cut(s) | 764 |
| MspI | CCGG | 4 cut(s) | 80, 872, 972, 1071 |
| MspR9I | CCNGG | 1 cut(s) | 376 |
| Mva1269I | GAATGC | 1 cut(s) | 526 |
| MvaI | CCWGG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 89, 293, 575, 810, 830, 1181, 1244 |
| NaeI | GCCGGC | 3 cut(s) | 81, 873, 1072 |
| NcoI | CCATGG | 1 cut(s) | 93 |
| NdeII | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| NgoMIV | GCCGGC | 3 cut(s) | 79, 871, 1070 |
| NheI | GCTAGC | 1 cut(s) | 565 |
| NlaIII | CATG | 7 cut(s) | 97, 607, 848, 1034, 1078, 1115, 1247 |
| NlaIV | GGNNCC | 2 cut(s) | 411, 706 |
| NmuCI | GTSAC | 2 cut(s) | 3, 442 |
| NspI | RCATGY | 1 cut(s) | 1034 |
| OliI | CACNNNNGTG | 1 cut(s) | 866 |
| PaeI | GCATGC | 1 cut(s) | 1034 |
| PctI | GAATGC | 1 cut(s) | 526 |
| PdiI | GCCGGC | 3 cut(s) | 81, 873, 1072 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1225 |
| PfeI | GAWTC | 1 cut(s) | 983 |
| PfoI | TCCNGGA | 1 cut(s) | 374 |
| PkrI | GCNGC | 4 cut(s) | 159, 766, 835, 1086 |
| PleI | GAGTC | 1 cut(s) | 319 |
| PpsI | GAGTC | 1 cut(s) | 319 |
| Psp6I | CCWGG | 1 cut(s) | 374 |
| PspGI | CCWGG | 1 cut(s) | 374 |
| PspN4I | GGNNCC | 2 cut(s) | 411, 706 |
| PstI | CTGCAG | 1 cut(s) | 769 |
| PsuI | RGATCY | 1 cut(s) | 784 |
| PvuII | CAGCTG | 1 cut(s) | 764 |
| RsaI | GTAC | 5 cut(s) | 169, 706, 748, 898, 930 |
| RsaNI | GTAC | 5 cut(s) | 168, 705, 747, 897, 929 |
| RseI | CAYNNNNRTG | 2 cut(s) | 866, 1079 |
| SaqAI | TTAA | 3 cut(s) | 672, 951, 1249 |
| SatI | GCNGC | 4 cut(s) | 158, 765, 834, 1085 |
| Sau3AI | GATC | 6 cut(s) | 619, 652, 720, 784, 1108, 1165 |
| ScaI | AGTACT | 2 cut(s) | 169, 898 |
| SchI | GAGTC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 1 cut(s) | 376 |
| SduI | GDGCHC | 1 cut(s) | 634 |
| SfaNI | GCATC | 5 cut(s) | 29, 199, 305, 499, 1071 |
| SfcI | CTRYAG | 1 cut(s) | 765 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 866, 1079 |
| SmlI | CTYRAG | 1 cut(s) | 1088 |
| SmoI | CTYRAG | 1 cut(s) | 1088 |
| SpeI | ACTAGT | 2 cut(s) | 752, 893 |
| SphI | GCATGC | 1 cut(s) | 1034 |
| Sse9I | AATT | 5 cut(s) | 316, 1057, 1126, 1145, 1221 |
| SsiI | CCGC | 1 cut(s) | 811 |
| SspMI | CTAG | 5 cut(s) | 354, 566, 753, 858, 894 |
| StyD4I | CCNGG | 1 cut(s) | 374 |
| StyI | CCWWGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 2 cut(s) | 491, 612 |
| TaiI | ACGT | 1 cut(s) | 39 |
| TaqI | TCGA | 6 cut(s) | 195, 587, 649, 655, 798, 922 |
| TasI | AATT | 5 cut(s) | 316, 1057, 1126, 1145, 1221 |
| TatI | WGTACW | 2 cut(s) | 167, 896 |
| TfiI | GAWTC | 1 cut(s) | 983 |
| Tru1I | TTAA | 3 cut(s) | 672, 951, 1249 |
| Tru9I | TTAA | 3 cut(s) | 672, 951, 1249 |
| TscAI | CASTG | 2 cut(s) | 12, 528 |
| TseFI | GTSAC | 2 cut(s) | 3, 442 |
| TseI | GCWGC | 4 cut(s) | 157, 764, 833, 1084 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 442 |
| TspDTI | ATGAA | 8 cut(s) | 114, 135, 168, 677, 840, 900, 1176, 1218 |
| TspRI | CASTG | 2 cut(s) | 12, 528 |
| XapI | RAATTY | 3 cut(s) | 316, 1057, 1126 |
| XceI | RCATGY | 1 cut(s) | 1034 |
| XmiI | GTMKAC | 1 cut(s) | 890 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1225 |
| XspI | CTAG | 5 cut(s) | 354, 566, 753, 858, 894 |
| ZrmI | AGTACT | 2 cut(s) | 169, 898 |