RLG00000008937

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000328
Physical Location & Seq
Forward (+)
43134696 .. 43137556
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008937

Sequence Viewer

Length: 606 bp
ATGGATTGTTGCTGTTCCGGGACTGAAATTACTCTCAAGATGTTGGATATGAAGACCATCTTCTTTTTCCTTGTAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTACTGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGCTGGTTATGGTTCTTGCTCAGGCAAAGGCTGATGCAATCATATCAAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAATTGCGGCAGATACAACTATTCTGGAGGCCATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGACATGTGTTTGAGGATAATTCCTGTTTGGTGATTCCTCATAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGCAAATCTGATATAAAGAGCATAAAGGTGAGTCTAGGGGTGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTACATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

202

Amino Acids

22.65

Weight (kDa)

7.58

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 38 - 95 1.5e-06 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 315
AcuI CTGAAG 2 cut(s) 539, 548
AfaI GTAC 1 cut(s) 576
AflIII ACRYGT 1 cut(s) 370
AluBI AGCT 2 cut(s) 160, 450
AluI AGCT 2 cut(s) 160, 450
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 1 cut(s) 315
AoxI GGCC 2 cut(s) 288, 559
ApeKI GCWGC 2 cut(s) 295, 450
AseI ATTAAT 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 3 cut(s) 409, 490, 502
AvaII GGWCC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 307, 437
BccI CCATC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 114
BglII AGATCT 2 cut(s) 106, 410
BisI GCNGC 3 cut(s) 267, 296, 451
BlsI GCNGC 3 cut(s) 268, 297, 452
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 4 cut(s) 102, 144, 181, 226
BpiI GAAGAC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 20, 536
BpuMI CCSGG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 151
BseGI GGATG 3 cut(s) 93, 135, 241
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 307, 437
BshFI GGCC 2 cut(s) 290, 561
BsiSI CCGG 2 cut(s) 18, 152
BslFI GGGAC 2 cut(s) 34, 370
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 34, 370
BsnI GGCC 2 cut(s) 290, 561
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 3 cut(s) 106, 307, 410
BspACI CCGC 1 cut(s) 266
BspANI GGCC 2 cut(s) 290, 561
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 574
BssMI GATC 3 cut(s) 106, 307, 410
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 574
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 93, 135, 241
BstKTI GATC 3 cut(s) 109, 310, 413
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 3 cut(s) 106, 307, 410
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 307, 437
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 3 cut(s) 106, 307, 410
BstYI RGATCY 3 cut(s) 106, 307, 410
BsuRI GGCC 2 cut(s) 290, 561
BtsCI GGATG 3 cut(s) 93, 135, 241
BtsIMutI CAGTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 575
CviAII CATG 5 cut(s) 292, 371, 421, 578, 595
CviJI RGCY 7 cut(s) 160, 188, 290, 439, 450, 561, 599
CviKI_1 RGCY 7 cut(s) 160, 188, 290, 439, 450, 561, 599
CviQI GTAC 1 cut(s) 575
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 108, 309, 412
DpnII GATC 3 cut(s) 106, 307, 410
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 2 cut(s) 539, 548
FaeI CATG 5 cut(s) 295, 374, 424, 581, 598
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 34, 370
FatI CATG 5 cut(s) 291, 370, 420, 577, 594
Fnu4HI GCNGC 3 cut(s) 267, 296, 451
FokI GGATG 3 cut(s) 80, 122, 248
Fsp4HI GCNGC 3 cut(s) 267, 296, 451
FspBI CTAG 1 cut(s) 485
GluI GCNGC 3 cut(s) 267, 296, 451
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 2 cut(s) 290, 561
HapII CCGG 2 cut(s) 18, 152
Hin1II CATG 5 cut(s) 295, 374, 424, 581, 598
HinfI GANTC 3 cut(s) 338, 400, 481
HpaII CCGG 2 cut(s) 18, 152
HphI GGTGA 3 cut(s) 409, 490, 502
Hpy188I TCNGA 3 cut(s) 140, 460, 528
Hpy188III TCNNGA 3 cut(s) 37, 284, 553
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 116, 194, 295, 453
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 5 cut(s) 295, 374, 424, 581, 598
Kzo9I GATC 3 cut(s) 106, 307, 410
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 307, 437
LweI GCATC 4 cut(s) 102, 144, 181, 226
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 86, 318
MalI GATC 3 cut(s) 108, 309, 412
MboI GATC 3 cut(s) 106, 307, 410
MboII GAAGA 6 cut(s) 52, 64, 511, 514, 539, 541
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 3 cut(s) 106, 307, 410
MluCI AATT 4 cut(s) 27, 255, 261, 385
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 6 cut(s) 148, 280, 373, 414, 498, 575
MseI TTAA 4 cut(s) 329, 495, 570, 587
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 2 cut(s) 18, 152
MspR9I CCNGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 255
NciI CCSGG 1 cut(s) 19
NdeII GATC 3 cut(s) 106, 307, 410
NlaIII CATG 5 cut(s) 295, 374, 424, 581, 598
NlaIV GGNNCC 1 cut(s) 358
NspI RCATGY 1 cut(s) 374
PciI ACATGT 1 cut(s) 370
PfeI GAWTC 2 cut(s) 338, 400
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 3 cut(s) 268, 297, 452
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PscI ACATGT 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 357
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 3 cut(s) 106, 307, 410
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 4 cut(s) 329, 495, 570, 587
SatI GCNGC 3 cut(s) 267, 296, 451
Sau3AI GATC 3 cut(s) 106, 307, 410
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 19
SetI ASST 6 cut(s) 85, 162, 247, 329, 452, 480
SfaNI GCATC 4 cut(s) 102, 144, 181, 226
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 35, 551
SmoI CTYRAG 2 cut(s) 35, 551
Sse9I AATT 4 cut(s) 27, 255, 261, 385
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 303
TaqII GACCGA 1 cut(s) 374
TasI AATT 4 cut(s) 27, 255, 261, 385
TatI WGTACW 1 cut(s) 574
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 338, 400
Tru1I TTAA 4 cut(s) 329, 495, 570, 587
Tru9I TTAA 4 cut(s) 329, 495, 570, 587
TscAI CASTG 1 cut(s) 308
TseI GCWGC 2 cut(s) 295, 450
TspDTI ATGAA 4 cut(s) 65, 437, 449, 583
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 357
VspI ATTAAT 1 cut(s) 570
XceI RCATGY 1 cut(s) 374
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.