Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

31828908 .. 31834522

Gene Structure 5615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAATATTTTCTGGGATGACGGTGTTGGATGCCAAACTGAAAATTCTTACTGCAGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTAGCTTTGCAGCCTGCAATGGAATGCATCCCTCTTGTAATGGAACCAGAATCTGGTTTTTATGTAGATGCGGTAGTTGTTTTGGATTTTCAGTCTCTTTATCCATCAATGAGAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

99

Amino Acids

11.04

Weight (kDa)

8.46

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B	PF00136	71 - 97	9.2e-09	DNA polymerase family B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	143, 152
AfiI	CCNNNNNNNGG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	54, 187
ApoI	RAATTY	1 cut(s)	43
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	66, 199
BccI	CCATC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	2 cut(s)	55, 188
BlsI	GCNGC	2 cut(s)	56, 189
BmiI	GGNNCC	1 cut(s)	222
BmsI	GCATC	3 cut(s)	20, 213, 235
BpuEI	CTTGAG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	22, 35, 204
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	66, 199
BshFI	GGCC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	22, 35, 204
BstMAI	GTCTC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	66, 199
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	22, 35, 204
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	230
CviJI	RGCY	4 cut(s)	88, 165, 182, 190
CviKI_1	RGCY	4 cut(s)	88, 165, 182, 190
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	143, 152
EcoT22I	ATGCAT	1 cut(s)	206
FaiI	YATR	4 cut(s)	68, 77, 240, 298
Fnu4HI	GCNGC	2 cut(s)	55, 188
FokI	GGATG	3 cut(s)	29, 42, 191
Fsp4HI	GCNGC	2 cut(s)	55, 188
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	55, 188
HaeIII	GGCC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	64, 132
Hpy188III	TCNNGA	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	54, 187, 194, 204, 296
LpnPI	CCDG	3 cut(s)	204, 216, 237
Lsp1109I	GCAGC	2 cut(s)	66, 199
LweI	GCATC	3 cut(s)	20, 213, 235
MaeI	CTAG	1 cut(s)	89
MboII	GAAGA	4 cut(s)	115, 118, 143, 145
MluCI	AATT	2 cut(s)	43, 291
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	78, 102, 219
Mph1103I	ATGCAT	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	99, 174
MslI	CAYNNNNRTG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	56, 189
PshBI	ATTAAT	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	99, 174
SatI	GCNGC	2 cut(s)	55, 188
SetI	ASST	2 cut(s)	84, 184
SfaNI	GCATC	3 cut(s)	20, 213, 235
SfcI	CTRYAG	1 cut(s)	52
SgeI	CNNG	8 cut(s)	25, 101, 169, 179, 203, 224, 236, 243
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	43, 291
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	23
TasI	AATT	2 cut(s)	43, 291
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	99, 174
Tru9I	TTAA	2 cut(s)	99, 174
TseI	GCWGC	2 cut(s)	54, 187
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.