RLG00000036717

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000328
Physical Location & Seq
Reverse (-)
83715808 .. 83716869
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036717

Sequence Viewer

Length: 330 bp
ATGCAGAGGAGGAGGATATGGATAACAATGATGATCTTGCTGGAGATGCCATTGAAAGTGATGACAAGGAAGAATAGCATCAGTGCCCCTATGATGGTTGAGGTGGAGGGTGAGGCTGACCCACTTGAGGATTATGCTTCTTTTGAGTTAAAGAAACATGTGAGAGGTCCAATTGCCTTGTCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAACGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

110

Amino Acids

12.4

Weight (kDa)

10.05

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 263, 272
AfiI CCNNNNNNNGG 2 cut(s) 94, 127
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 55
AoxI GGCC 1 cut(s) 283
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 122, 214
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 88
BccI CCATC 1 cut(s) 88
BfaI CTAG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmsI GCATC 2 cut(s) 36, 87
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 146, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 127
BseLI CCNNNNNNNGG 2 cut(s) 94, 127
BseRI GAGGAG 2 cut(s) 22, 25
BseSI GKGCMC 1 cut(s) 88
BshFI GGCC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 94, 127
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 33
BspANI GGCC 1 cut(s) 285
BssMI GATC 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 221
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 2 cut(s) 158, 319
CviJI RGCY 4 cut(s) 116, 208, 285, 323
CviKI_1 RGCY 4 cut(s) 116, 208, 285, 323
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 263, 272
FaeI CATG 2 cut(s) 161, 322
FaiI YATR 9 cut(s) 19, 92, 135, 159, 188, 197, 301, 303, 320
FatI CATG 2 cut(s) 157, 318
FspBI CTAG 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 2 cut(s) 161, 322
HphI GGTGA 2 cut(s) 122, 214
Hpy188I TCNGA 2 cut(s) 184, 252
Hpy188III TCNNGA 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 161, 322
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 1 cut(s) 26
LweI GCATC 2 cut(s) 36, 87
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 261
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 5 cut(s) 82, 235, 238, 263, 265
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 171
MseI TTAA 4 cut(s) 149, 219, 294, 311
MslI CAYNNNNRTG 1 cut(s) 200
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 161, 322
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PscI ACATGT 1 cut(s) 157
PshBI ATTAAT 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 261
PspPI GGNCC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 4 cut(s) 149, 219, 294, 311
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 105, 169, 204, 264
SfaNI GCATC 2 cut(s) 36, 87
SgeI CNNG 9 cut(s) 49, 53, 78, 137, 170, 190, 221, 289, 299
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 125, 275
SmoI CTYRAG 2 cut(s) 125, 275
Sse9I AATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 209
TaiI ACGT 1 cut(s) 264
TasI AATT 1 cut(s) 171
Tru1I TTAA 4 cut(s) 149, 219, 294, 311
Tru9I TTAA 4 cut(s) 149, 219, 294, 311
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 307
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 294
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.