Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Reverse (-)

58682456 .. 58684373

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGAAGAAGGGTGAAAGGTCTGGTGCTTCGTGCTCAAGCTTGGATCTTCCTTGCATGGATAAGCTCAGGGATCAGCTTTCCTGAGAGTGATTGGATCGACCAGTTAAGGAATATGATGGCTGACGGCGGAGAGGAATCGGCGATATTCAAGGAGGTGAGGGAGAAGGAGAGGAAGAAGAGGTGGGCGGTGGAGAAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGGCCAAGGTGGTGGAGGAGAAGAAGGACAAGGAGGAGGAGAAGAGTGGAAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAATACTCATGGACCCAGAGTCTGTATGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAGGGGATATTGTTTATGAGGCCAAGAAGAACAGTCTGAAGTTTGGACCGAAGGGTCGGTCTCTTATAATTGATGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

170

Amino Acids

19.68

Weight (kDa)

9.61

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	109 - 155	3.2e-06	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AasI	GACNNNNNNGTC	1 cut(s)	447
AciI	CCGC	4 cut(s)	129, 188, 218, 502
AclWI	GGATC	3 cut(s)	53, 80, 104
AcuI	CTGAAG	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	151
AhdI	GACNNNNNGTC	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	3 cut(s)	41, 66, 78
AluI	AGCT	3 cut(s)	41, 66, 78
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	53, 80, 104
AlwNI	CAGNNNCTG	2 cut(s)	349, 380
AoxI	GGCC	3 cut(s)	228, 240, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspS9I	GGNCC	2 cut(s)	339, 440
AsuHPI	GGTGA	2 cut(s)	25, 169
AvaII	GGWCC	2 cut(s)	339, 440
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	339, 440
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	339, 440
BmiI	GGNNCC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	231, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	103, 374
BseDI	CCNNGG	2 cut(s)	231, 243
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	75, 81
BseNI	ACTGG	2 cut(s)	103, 374
BseRI	GAGGAG	4 cut(s)	251, 269, 287, 290
BshFI	GGCC	3 cut(s)	230, 242, 416
BsiHKAI	GWGCWC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	230, 242, 416
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	45, 72, 96
BspACI	CCGC	4 cut(s)	129, 188, 218, 502
BspANI	GGCC	3 cut(s)	230, 242, 416
BspCNI	CTCAG	2 cut(s)	76, 80
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	53, 80, 104
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	103, 374
BssECI	CCNNGG	2 cut(s)	231, 243
BssMI	GATC	3 cut(s)	45, 72, 96
BssT1I	CCWWGG	2 cut(s)	231, 243
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	173, 275
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	67, 84
BstKTI	GATC	3 cut(s)	48, 75, 99
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	45, 72, 96
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	230, 242, 416
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	2 cut(s)	349, 380
Cfr13I	GGNCC	2 cut(s)	339, 440
CviAII	CATG	3 cut(s)	57, 336, 496
CviJI	RGCY	8 cut(s)	41, 66, 78, 122, 230, 242, 316, 416
CviKI_1	RGCY	8 cut(s)	41, 66, 78, 122, 230, 242, 316, 416
DdeI	CTNAG	2 cut(s)	67, 84
DpnI	GATC	3 cut(s)	47, 74, 98
DpnII	GATC	3 cut(s)	45, 72, 96
DrdI	GACNNNNNNGTC	1 cut(s)	447
DriI	GACNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	173, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	2 cut(s)	173, 275
EciI	GGCGGA	2 cut(s)	144, 233
Eco130I	CCWWGG	2 cut(s)	231, 243
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	339, 440
Eco57I	CTGAAG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	231, 243
ErhI	CCWWGG	2 cut(s)	231, 243
FaeI	CATG	3 cut(s)	60, 339, 499
FatI	CATG	3 cut(s)	56, 335, 495
HaeIII	GGCC	3 cut(s)	230, 242, 416
Hin1II	CATG	3 cut(s)	60, 339, 499
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	137, 346
HphI	GGTGA	2 cut(s)	25, 169
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	6 cut(s)	3, 160, 190, 205, 256, 439
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	2 cut(s)	56, 483
HpyF3I	CTNAG	2 cut(s)	67, 84
Hsp92II	CATG	3 cut(s)	60, 339, 499
Kzo9I	GATC	3 cut(s)	45, 72, 96
LpnPI	CCDG	9 cut(s)	8, 54, 96, 116, 356, 369, 381, 387, 393
MalI	GATC	3 cut(s)	47, 74, 98
MboI	GATC	3 cut(s)	45, 72, 96
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	462, 508
MlyI	GAGTC	1 cut(s)	355
MseI	TTAA	2 cut(s)	107, 360
MslI	CAYNNNNRTG	1 cut(s)	374
NdeII	GATC	3 cut(s)	45, 72, 96
NlaIII	CATG	3 cut(s)	60, 339, 499
NlaIV	GGNNCC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	339, 440
PstNI	CAGNNNCTG	2 cut(s)	349, 380
PsuI	RGATCY	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	107, 360
Sau3AI	GATC	3 cut(s)	45, 72, 96
Sau96I	GGNCC	2 cut(s)	339, 440
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	22, 43, 68, 80, 159, 185, 225, 249, 360
SinI	GGWCC	2 cut(s)	339, 440
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	462, 508
SsiI	CCGC	4 cut(s)	129, 188, 218, 502
StyI	CCWWGG	2 cut(s)	231, 243
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	2 cut(s)	441, 457
TasI	AATT	2 cut(s)	462, 508
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	107, 360
Tru9I	TTAA	2 cut(s)	107, 360
TscAI	CASTG	1 cut(s)	381
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	339, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.