Rh7DG402000

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000328
Physical Location & Seq
Forward (+)
55412042 .. 55416067
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG402000.1

Sequence Viewer

Length: 759 bp
ATGATGCAGTCCATGCCGGAGCTCCGCCTTGTTCCCTCGTCGAGCCCACCGTGGAAGATAAGACCTAACATTCAAGACAAGGCTCGCCGTCGATTCAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTAGACTCCGGACAGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGACAAATTATGCAGAAACTGTGCCGACTGCATGTTGGGAATACAGTACCAGCCCAATTTACGGTTGGGGTGATGTTGGCTCCAAGCAGAAGCCTACTGCTGGATGGTTAGCAGCTTTTCCCGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTATGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGATCGAGTGGAGATCTATTTCCATGAAATACCATATGAAGCCATTGAGAAGCTGGATGACGGGGTTGGATGCCAAACTGAAAATTCTTACTGCAGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGTGATTAAGAAGAAGAGGAACGTTGTGCTGAAGTATCTGGAGAATAATGTTGCTTTTCTTCTCCAGATTGGCCTTGATATTAATGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

252

Amino Acids

28.71

Weight (kDa)

9.69

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tocopherol_cycl PF14249 88 - 121 3.8e-08 Tocopherol cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 1 cut(s) 25
AclI AACGTT 1 cut(s) 663
AclWI GGATC 2 cut(s) 469, 519
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 2 cut(s) 129, 692
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 299, 338
AgsI TTSAA 2 cut(s) 74, 427
AluBI AGCT 3 cut(s) 22, 353, 562
AluI AGCT 3 cut(s) 22, 353, 562
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 2 cut(s) 469, 519
AlwNI CAGNNNCTG 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 3 cut(s) 350, 449, 603
ApoI RAATTY 1 cut(s) 592
AseI ATTAAT 1 cut(s) 723
AsuHPI GGTGA 3 cut(s) 320, 643, 655
BanII GRGCYC 2 cut(s) 24, 47
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 362, 461, 615
BccI CCATC 2 cut(s) 336, 403
BceAI ACGGC 2 cut(s) 72, 431
BfaI CTAG 2 cut(s) 155, 638
BfmI CTRYAG 1 cut(s) 601
BglII AGATCT 2 cut(s) 128, 522
BisI GCNGC 3 cut(s) 351, 450, 604
BlsI GCNGC 3 cut(s) 352, 451, 605
BmiI GGNNCC 1 cut(s) 319
BmsI GCATC 3 cut(s) 124, 197, 569
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 3 cut(s) 459, 689, 701
Bpu10I CCTNAGC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 50, 360
BsaWI WCCGGW 2 cut(s) 161, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 338
BseAI TCCGGA 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 50, 360
BseGI GGATG 6 cut(s) 115, 188, 347, 395, 571, 584
BseLI CCNNNNNNNGG 2 cut(s) 299, 338
BseMII CTCAG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 362, 461, 615
BshFI GGCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 3 cut(s) 17, 162, 205
BslI CCNNNNNNNGG 2 cut(s) 299, 338
BsnI GGCC 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 24, 47
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 4 cut(s) 128, 461, 511, 522
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 1 cut(s) 243
BspEI TCCGGA 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 605
BspPI GGATC 2 cut(s) 469, 519
BssECI CCNNGG 2 cut(s) 50, 360
BssMI GATC 4 cut(s) 128, 461, 511, 522
Bst4CI ACNGT 5 cut(s) 51, 259, 284, 302, 457
Bst6I CTCTTC 1 cut(s) 650
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 2 cut(s) 50, 360
BstF5I GGATG 6 cut(s) 115, 188, 347, 395, 571, 584
BstKTI GATC 4 cut(s) 131, 464, 514, 525
BstMBI GATC 4 cut(s) 128, 461, 511, 522
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNSI RCATGY 2 cut(s) 273, 449
BstSFI CTRYAG 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 362, 461, 615
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 3 cut(s) 128, 461, 522
BstYI RGATCY 3 cut(s) 128, 461, 522
BsuRI GGCC 1 cut(s) 714
BtgI CCRYGG 2 cut(s) 50, 360
BtsCI GGATG 6 cut(s) 115, 188, 347, 395, 571, 584
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 285
CviAII CATG 5 cut(s) 13, 270, 446, 533, 748
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 130, 463, 513, 524
DpnII GATC 4 cut(s) 128, 461, 511, 522
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 24, 47
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 129, 692
EcoICRI GAGCTC 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 24, 47
FaeI CATG 5 cut(s) 16, 273, 449, 536, 751
FatI CATG 5 cut(s) 12, 269, 445, 532, 747
FauNDI CATATG 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 351, 450, 604
FokI GGATG 6 cut(s) 102, 175, 354, 382, 578, 591
FriOI GRGCYC 2 cut(s) 24, 47
Fsp4HI GCNGC 3 cut(s) 351, 450, 604
FspBI CTAG 2 cut(s) 155, 638
GluI GCNGC 3 cut(s) 351, 450, 604
GsuI CTGGAG 3 cut(s) 459, 689, 701
HaeIII GGCC 1 cut(s) 714
HapII CCGG 3 cut(s) 17, 162, 205
Hin1II CATG 5 cut(s) 16, 273, 449, 536, 751
HinfI GANTC 3 cut(s) 93, 158, 492
HpaII CCGG 3 cut(s) 17, 162, 205
HphI GGTGA 3 cut(s) 320, 643, 655
Hpy188I TCNGA 2 cut(s) 193, 613
Hpy188III TCNNGA 6 cut(s) 74, 97, 162, 438, 680, 706
Hpy99I CGWCG 2 cut(s) 43, 93
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 5 cut(s) 51, 259, 284, 302, 457
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 5 cut(s) 7, 251, 269, 449, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 5 cut(s) 16, 273, 449, 536, 751
Kpn2I TCCGGA 1 cut(s) 161
Kzo9I GATC 4 cut(s) 128, 461, 511, 522
LmnI GCTCC 3 cut(s) 19, 27, 323
Lsp1109I GCAGC 3 cut(s) 362, 461, 615
LweI GCATC 3 cut(s) 124, 197, 569
MaeI CTAG 2 cut(s) 155, 638
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 108, 472
MalI GATC 4 cut(s) 130, 463, 513, 524
MboI GATC 4 cut(s) 128, 461, 511, 522
MboII GAAGA 7 cut(s) 67, 132, 135, 419, 664, 667, 692
MflI RGATCY 3 cut(s) 128, 461, 522
MhlI GDGCHC 2 cut(s) 24, 47
MluCI AATT 4 cut(s) 244, 294, 419, 592
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 6 cut(s) 46, 201, 434, 627, 651, 728
MroI TCCGGA 1 cut(s) 161
MseI TTAA 4 cut(s) 483, 648, 723, 740
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 3 cut(s) 17, 162, 205
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 544
NdeII GATC 4 cut(s) 128, 461, 511, 522
NlaIII CATG 5 cut(s) 16, 273, 449, 536, 751
NlaIV GGNNCC 1 cut(s) 319
NspI RCATGY 2 cut(s) 273, 449
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 2 cut(s) 93, 492
PkrI GCNGC 3 cut(s) 352, 451, 605
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 605
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 3 cut(s) 128, 461, 522
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 483, 648, 723, 740
SatI GCNGC 3 cut(s) 351, 450, 604
Sau3AI GATC 4 cut(s) 128, 461, 511, 522
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 2 cut(s) 24, 47
SetI ASST 9 cut(s) 24, 67, 107, 355, 379, 483, 564, 633, 666
SfaNI GCATC 3 cut(s) 124, 197, 569
SfcI CTRYAG 1 cut(s) 601
SmiMI CAYNNNNRTG 1 cut(s) 629
Sse9I AATT 4 cut(s) 244, 294, 419, 592
SsiI CCGC 1 cut(s) 25
SspMI CTAG 2 cut(s) 155, 638
SstI GAGCTC 1 cut(s) 24
TaaI ACNGT 5 cut(s) 51, 259, 284, 302, 457
TaiI ACGT 1 cut(s) 666
TaqI TCGA 3 cut(s) 41, 91, 514
TasI AATT 4 cut(s) 244, 294, 419, 592
TfiI GAWTC 2 cut(s) 93, 492
Tru1I TTAA 4 cut(s) 483, 648, 723, 740
Tru9I TTAA 4 cut(s) 483, 648, 723, 740
TscAI CASTG 1 cut(s) 462
TseI GCWGC 3 cut(s) 350, 449, 603
TspDTI ATGAA 4 cut(s) 387, 549, 561, 736
TspRI CASTG 1 cut(s) 462
VspI ATTAAT 1 cut(s) 723
XapI RAATTY 1 cut(s) 592
XceI RCATGY 2 cut(s) 273, 449
XcmI CCANNNNNNNNNTGG 2 cut(s) 300, 559
XspI CTAG 2 cut(s) 155, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.