RLG00000005158

Maf-like protein DDB_G0281937 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000328
Physical Location & Seq
Forward (+)
65525516 .. 65535608
10093 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005158

Sequence Viewer

Length: 546 bp
ATGGACTCGAACTCGAAACAGGAGCAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCTATACTCCGGACTGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAGGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGCTGATGCAATCATATCAAAAATACAAATTACCCATAGTAAAGAGAAGGATGCTGAACCTGAACCAACAATTGTAACTGCGGCAGATATAACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAATAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAAAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTAGCCTTGATATTAATGTACATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

182

Amino Acids

20.57

Weight (kDa)

9.1

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 3 cut(s) 58, 479, 488
AfaI GTAC 1 cut(s) 516
AgsI TTSAA 1 cut(s) 324
AluBI AGCT 1 cut(s) 390
AluI AGCT 1 cut(s) 390
AlwI GGATC 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 277, 390
AseI ATTAAT 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 289, 377
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 96
BglII AGATCT 2 cut(s) 57, 350
BisI GCNGC 3 cut(s) 249, 278, 391
BlsI GCNGC 3 cut(s) 250, 279, 392
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 340
BmsI GCATC 4 cut(s) 53, 126, 163, 208
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 476
BsaWI WCCGGW 2 cut(s) 90, 133
BseAI TCCGGA 1 cut(s) 90
BseGI GGATG 3 cut(s) 44, 117, 223
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 289, 377
BsiSI CCGG 2 cut(s) 91, 134
BslFI GGGAC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 352
Bsp13I TCCGGA 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 57, 289, 350
BspACI CCGC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 172
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 514
BssMI GATC 3 cut(s) 57, 289, 350
Bst4CI ACNGT 1 cut(s) 285
BstAUI TGTACA 1 cut(s) 514
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 44, 117, 223
BstKTI GATC 3 cut(s) 60, 292, 353
BstMBI GATC 3 cut(s) 57, 289, 350
BstNSI RCATGY 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 289, 377
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 3 cut(s) 57, 289, 350
BstYI RGATCY 3 cut(s) 57, 289, 350
BtsCI GGATG 3 cut(s) 44, 117, 223
BtsIMutI CAGTG 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 515
CviAII CATG 4 cut(s) 274, 361, 518, 535
CviJI RGCY 6 cut(s) 170, 379, 390, 424, 501, 539
CviKI_1 RGCY 6 cut(s) 170, 379, 390, 424, 501, 539
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 1 cut(s) 159
DpnI GATC 3 cut(s) 59, 291, 352
DpnII GATC 3 cut(s) 57, 289, 350
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 3 cut(s) 58, 479, 488
FaeI CATG 4 cut(s) 277, 364, 521, 538
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 273, 360, 517, 534
Fnu4HI GCNGC 3 cut(s) 249, 278, 391
FokI GGATG 3 cut(s) 31, 104, 230
Fsp4HI GCNGC 3 cut(s) 249, 278, 391
FspBI CTAG 1 cut(s) 425
GluI GCNGC 3 cut(s) 249, 278, 391
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 2 cut(s) 91, 134
Hin1II CATG 4 cut(s) 277, 364, 521, 538
HinfI GANTC 2 cut(s) 5, 320
HpaII CCGG 2 cut(s) 91, 134
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 122, 400, 468
Hpy188III TCNNGA 3 cut(s) 91, 266, 493
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 4 cut(s) 98, 176, 277, 393
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 4 cut(s) 277, 364, 521, 538
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 57, 289, 350
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 289, 377
LweI GCATC 4 cut(s) 53, 126, 163, 208
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 3 cut(s) 37, 241, 300
MalI GATC 3 cut(s) 59, 291, 352
MboI GATC 3 cut(s) 57, 289, 350
MboII GAAGA 5 cut(s) 61, 64, 451, 479, 481
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 3 cut(s) 57, 289, 350
MluCI AATT 2 cut(s) 195, 237
MnlI CCTC 4 cut(s) 130, 262, 414, 515
MroI TCCGGA 1 cut(s) 90
MseI TTAA 4 cut(s) 311, 435, 510, 527
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 91, 134
MunI CAATTG 1 cut(s) 237
NdeII GATC 3 cut(s) 57, 289, 350
NlaIII CATG 4 cut(s) 277, 364, 521, 538
NlaIV GGNNCC 1 cut(s) 340
NspI RCATGY 1 cut(s) 277
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 250, 279, 392
PshBI ATTAAT 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 1 cut(s) 339
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 3 cut(s) 57, 289, 350
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 4 cut(s) 311, 435, 510, 527
SatI GCNGC 3 cut(s) 249, 278, 391
Sau3AI GATC 3 cut(s) 57, 289, 350
Sau96I GGNCC 1 cut(s) 339
SetI ASST 5 cut(s) 36, 229, 311, 392, 420
SfaNI GCATC 4 cut(s) 53, 126, 163, 208
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 2 cut(s) 195, 237
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 8, 14
TaqII GACCGA 1 cut(s) 356
TasI AATT 2 cut(s) 195, 237
TatI WGTACW 1 cut(s) 514
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 4 cut(s) 311, 435, 510, 527
Tru9I TTAA 4 cut(s) 311, 435, 510, 527
TscAI CASTG 1 cut(s) 290
TseI GCWGC 2 cut(s) 277, 390
TspDTI ATGAA 3 cut(s) 377, 389, 523
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 339
VspI ATTAAT 1 cut(s) 510
XceI RCATGY 1 cut(s) 277
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.