Rh6AG164400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000328
Physical Location & Seq
Reverse (-)
26179466 .. 26180482
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG164400.1

Sequence Viewer

Length: 567 bp
ATGTGGGAGTGGGTGATGAGTGTTTGGGAGATTCCAATGGGTTTTGTGGGAGAATTCGAGAACGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTAGAGTGTGATGTTATAGGGATGCCTTTGGCGTGCAAGTTTTGTGATCTTGAGTTGGCTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTAAAGAGGCTGTTCTGGGGAAGTGTTAGCAATGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAAAAGTACAGTGAGTTTGTGAAATTCAAGGGGCGGTTATCAGATCCAATTCTTGTCTATGAAGTTTCAGGTAGAGATGGAAAAGAAGTTTGTGGTGGTTTTTTTGTAGATAAGGTTCTGGAAATGCTATCAGTGGAATTGGGCGAGTTTGTATCAAGGAAATTGGCGCCTGTTTTTGCATATTCTCTTGAGTTTTTTATACAGGGATGGTTGCTGGGCATTGGTGTCTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.45

Weight (kDa)

4.89

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AciI CCGC 1 cut(s) 364
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 53, 353
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 3 cut(s) 95, 190, 358
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 368
ApoI RAATTY 2 cut(s) 53, 353
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AspLEI GCGC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 496
BccI CCATC 3 cut(s) 212, 401, 531
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 498
BmsI GCATC 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 194, 539
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 73, 150, 542
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 544
BshNI GGYRCC 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 169, 373
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 169, 373
BssNI GRCGYC 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 73, 150, 542
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 172, 376
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 169, 373
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 73, 150, 542
BtsIMutI CAGTG 2 cut(s) 346, 468
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 499
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 241, 263
CviJI RGCY 5 cut(s) 182, 212, 222, 277, 326
CviKI_1 RGCY 5 cut(s) 182, 212, 222, 277, 326
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 183
DinI GGCGCC 1 cut(s) 498
DpnI GATC 2 cut(s) 171, 375
DpnII GATC 2 cut(s) 169, 373
EcoRI GAATTC 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 498
EheI GGCGCC 1 cut(s) 498
FaeI CATG 2 cut(s) 244, 266
FaiI YATR 7 cut(s) 120, 140, 242, 264, 390, 511, 530
FatI CATG 2 cut(s) 240, 262
FokI GGATG 3 cut(s) 80, 157, 549
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 498
GsaI CCCAGC 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 500
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 2 cut(s) 244, 266
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HinfI GANTC 2 cut(s) 31, 313
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 5 cut(s) 58, 173, 263, 449, 518
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 2 cut(s) 63, 194
HpyCH4V TGCA 3 cut(s) 159, 331, 509
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 63, 194
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 2 cut(s) 244, 266
HspAI GCGC 1 cut(s) 497
KasI GGCGCC 1 cut(s) 496
Kzo9I GATC 2 cut(s) 169, 373
LpnPI CCDG 7 cut(s) 268, 302, 384, 434, 513, 518, 530
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 63, 194
MalI GATC 2 cut(s) 171, 375
MboI GATC 2 cut(s) 169, 373
MboII GAAGA 1 cut(s) 322
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 373
MluCI AATT 7 cut(s) 53, 95, 122, 353, 378, 467, 491
Mly113I GGCGCC 1 cut(s) 497
MnlI CCTC 5 cut(s) 64, 108, 251, 259, 267
MseI TTAA 1 cut(s) 321
MunI CAATTG 1 cut(s) 95
NarI GGCGCC 1 cut(s) 497
NdeII GATC 2 cut(s) 169, 373
NlaIII CATG 2 cut(s) 244, 266
NlaIV GGNNCC 1 cut(s) 498
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 2 cut(s) 31, 313
PluTI GGCGCC 1 cut(s) 500
Psp1406I AACGTT 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 498
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 2 cut(s) 169, 373
SetI ASST 9 cut(s) 66, 119, 197, 214, 262, 270, 321, 403, 447
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 498
SmlI CTYRAG 2 cut(s) 173, 518
SmoI CTYRAG 2 cut(s) 173, 518
Sse9I AATT 7 cut(s) 53, 95, 122, 353, 378, 467, 491
SsiI CCGC 1 cut(s) 364
SspDI GGCGCC 1 cut(s) 496
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 2 cut(s) 66, 197
TaqI TCGA 2 cut(s) 57, 308
TasI AATT 7 cut(s) 53, 95, 122, 353, 378, 467, 491
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 31, 313
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 346, 468
TspDTI ATGAA 3 cut(s) 135, 257, 405
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 346, 468
XapI RAATTY 2 cut(s) 53, 353
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.