RLG00000019885

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000328
Physical Location & Seq
Reverse (-)
58074420 .. 58076191
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019885

Sequence Viewer

Length: 612 bp
ATGCAGCGCAAAAAGGTTCTGGACATTAGTGAGGTTCAGACCTATGTGATAAACAGTGTTAGAGTTCTCTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCTCCACATTTGCTTAATCCTACTTCGGCTATTATGTACAGCACCAAAGAGAATAGAAGACAAAGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTTCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTCTTCCTTCACGGGGCTCCCACTCAGTCTCATACCTACAGAAATGTTATGTCTCAGACTATTTTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGCTGAAGTATCTGAAGAATAATGTTGCTGTTCTTCTCAAGATTGGCCTTGATATTAACGTATATGGAGGGTTAAGTTTCATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

204

Amino Acids

23.29

Weight (kDa)

9.92

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 4 - 49 1.5e-09 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AclWI GGATC 2 cut(s) 247, 363
AcuI CTGAAG 2 cut(s) 545, 554
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 98, 280
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 3 cut(s) 98, 245, 456
AluI AGCT 3 cut(s) 98, 245, 456
Alw26I GTCTC 3 cut(s) 227, 300, 324
AlwI GGATC 2 cut(s) 247, 363
AoxI GGCC 2 cut(s) 83, 565
ApeKI GCWGC 3 cut(s) 4, 343, 456
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 496
AvaII GGWCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 177, 262
BbvI GCAGC 3 cut(s) 16, 355, 443
BcoDI GTCTC 3 cut(s) 227, 300, 324
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 304
BglII AGATCT 1 cut(s) 416
BisI GCNGC 3 cut(s) 5, 344, 457
BlsI GCNGC 3 cut(s) 6, 345, 458
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 285, 406
BpiI GAAGAC 2 cut(s) 177, 262
BpuEI CTTGAG 1 cut(s) 542
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 280
Bse1I ACTGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 98, 280
BseMII CTCAG 3 cut(s) 237, 305, 335
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 16, 355, 443
BshFI GGCC 2 cut(s) 85, 567
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 98, 280
BsmAI GTCTC 3 cut(s) 227, 300, 324
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 2 cut(s) 85, 567
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 4 cut(s) 203, 239, 355, 416
BspANI GGCC 2 cut(s) 85, 567
BspCNI CTCAG 3 cut(s) 238, 304, 334
BspLI GGNNCC 2 cut(s) 285, 406
BspPI GGATC 2 cut(s) 247, 363
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 241
BssMI GATC 4 cut(s) 203, 239, 355, 416
Bst4CI ACNGT 2 cut(s) 56, 351
Bst6I CTCTTC 2 cut(s) 74, 503
BstAUI TGTACA 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 246, 291, 321
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 4 cut(s) 206, 242, 358, 419
BstMAI GTCTC 3 cut(s) 227, 300, 324
BstMBI GATC 4 cut(s) 203, 239, 355, 416
BstNSI RCATGY 2 cut(s) 218, 343
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 3 cut(s) 16, 355, 443
BstV2I GAAGAC 2 cut(s) 177, 262
BstX2I RGATCY 2 cut(s) 355, 416
BstYI RGATCY 2 cut(s) 355, 416
BsuRI GGCC 2 cut(s) 85, 567
BtsIMutI CAGTG 2 cut(s) 61, 356
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 150
CviAII CATG 4 cut(s) 215, 340, 427, 601
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 246, 291, 321
DpnI GATC 4 cut(s) 205, 241, 357, 418
DpnII GATC 4 cut(s) 203, 239, 355, 416
Eam1104I CTCTTC 2 cut(s) 74, 503
EarI CTCTTC 2 cut(s) 74, 503
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 545, 554
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 4 cut(s) 218, 343, 430, 604
FaqI GGGAC 1 cut(s) 418
FatI CATG 4 cut(s) 214, 339, 426, 600
Fnu4HI GCNGC 3 cut(s) 5, 344, 457
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 5, 344, 457
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 8
GluI GCNGC 3 cut(s) 5, 344, 457
HaeIII GGCC 2 cut(s) 85, 567
HhaI GCGC 1 cut(s) 9
Hin1II CATG 4 cut(s) 218, 343, 430, 604
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 3 cut(s) 102, 111, 386
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 5 cut(s) 39, 203, 324, 466, 534
Hpy188III TCNNGA 4 cut(s) 20, 73, 226, 559
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 2 cut(s) 56, 351
HpyCH4IV ACGT 2 cut(s) 256, 579
HpyCH4V TGCA 3 cut(s) 4, 343, 459
HpyF3I CTNAG 3 cut(s) 246, 291, 321
HpySE526I ACGT 2 cut(s) 256, 579
Hsp92II CATG 4 cut(s) 218, 343, 430, 604
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 203, 239, 355, 416
LmnI GCTCC 2 cut(s) 211, 289
LpnPI CCDG 6 cut(s) 5, 84, 192, 222, 368, 449
Lsp1109I GCAGC 3 cut(s) 16, 355, 443
MaeI CTAG 1 cut(s) 491
MaeII ACGT 2 cut(s) 256, 579
MaeIII GTNAC 1 cut(s) 366
MalI GATC 4 cut(s) 205, 241, 357, 418
MboI GATC 4 cut(s) 203, 239, 355, 416
MboII GAAGA 7 cut(s) 61, 182, 262, 517, 520, 545, 547
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 2 cut(s) 355, 416
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 9 cut(s) 25, 75, 96, 125, 174, 328, 480, 504, 581
MseI TTAA 5 cut(s) 128, 377, 501, 576, 593
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 245
MunI CAATTG 1 cut(s) 264
NdeII GATC 4 cut(s) 203, 239, 355, 416
NlaIII CATG 4 cut(s) 218, 343, 430, 604
NlaIV GGNNCC 2 cut(s) 285, 406
NspI RCATGY 2 cut(s) 218, 343
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 102, 386
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 3 cut(s) 6, 345, 458
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 285, 406
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 2 cut(s) 355, 416
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 5 cut(s) 128, 377, 501, 576, 593
SatI GCNGC 3 cut(s) 5, 344, 457
Sau3AI GATC 4 cut(s) 203, 239, 355, 416
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 264
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 1 cut(s) 491
StuI AGGCCT 1 cut(s) 85
TaaI ACNGT 2 cut(s) 56, 351
TaiI ACGT 2 cut(s) 259, 582
TaqII GACCGA 1 cut(s) 422
TasI AATT 1 cut(s) 264
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 2 cut(s) 102, 386
Tru1I TTAA 5 cut(s) 128, 377, 501, 576, 593
Tru9I TTAA 5 cut(s) 128, 377, 501, 576, 593
TscAI CASTG 2 cut(s) 61, 356
TseI GCWGC 3 cut(s) 4, 343, 456
TspDTI ATGAA 3 cut(s) 443, 455, 589
TspRI CASTG 2 cut(s) 61, 356
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 405
XceI RCATGY 2 cut(s) 218, 343
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.