Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000328

Physical Location & Seq

Genomic Coordinates Forward (+)

29593206 .. 29593568

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAAACACTGGTGGTTCACGGAAAGACCTTATTGACCGGAGTGCCGGAAAACATGGTGCTCACTCCGGGCTCCGGTGTCGGCCTCGTAGCTGGTGCTTTCATTGGCGCCACGGCCTCTCACAGCAAAAGCCTCCATGTCTTCCCTGTCGGTGTTTTAGAGGGTCGGCGGTTCATGTGCCTTTTCCGGTTTAAGCTTTGGTGGATGACACGAGAGGATGGGGTCATGTGGGAAAGAAGTTCCGTGGAGACCCAATTCATGCTTGTGGAGACCAAAGATGATGGTGAAAGAAGTGATGAATCCTCTACCATTTACACAGTTTTCCTTCCTCTGCCGGAGGGCCGGTTCCGTTCGGTTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

6.28

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	4 - 119	7.8e-33	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000328)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13832 FvH4_3g26701 FvH4_4g14350 FvH4_7g17370
malus_domestica	MD12G1077900.v1.1 MD14G1070200.v1.1
prunus_persica	Prupe.2G073100_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1 Prupe.2G186800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365191 RchiOBHm_Chr2g0105141 RchiOBHm_Chr2g0120431 RchiOBHm_Chr2g0139381 RchiOBHm_Chr3g0494421 RchiOBHm_Chr6g0248181 RchiOBHm_Chr7g0235571
rosa_laevigata	RLG00000005158 RLG00000008937 RLG00000013742 RLG00000015899 RLG00000019885 RLG00000024515 RLG00000024516 RLG00000028740 RLG00000030656 RLG00000030662 RLG00000032758 RLG00000035668 RLG00000036717 RLG00000036718
rosa_multiflora	Rmu_sc0000252.1_g000016 Rmu_sc0001386.1_g000020 Rmu_sc0002271.1_g000010 Rmu_sc0003833.1_g000002 Rmu_sc0004718.1_g000004 Rmu_sc0006031.1_g000006 Rmu_sc0006598.1_g000013 Rmu_sc0007472.1_g000023 Rmu_sc0009313.1_g000012
rosa_roxburghii	Rroxscaffold_2G00103830 Rroxscaffold_2G00109880 Rroxscaffold_3G00225910 Rroxscaffold_3G00271600 Rroxscaffold_3G00274560 Rroxscaffold_4G00299580 Rroxscaffold_5G00352530 Rroxscaffold_5G00379280 Rroxscaffold_7G00177320
rosa_rugosa	Rorug01G0027200 Rorug01G0032100 Rorug02G0050600 Rorug02G0054800 Rorug04G0083300 Rorug05G0115200 Rorug07G0006800
rosa_samantha	Rh1CG086700 Rh1DG093300 Rh1DG217000 Rh2AG120200 Rh2AG227900 Rh2AG254000 Rh2AG434200 Rh2AG469200 Rh2BG159500 Rh2CG419900 Rh2CG455200 Rh2DG320100 Rh2DG603500 Rh3CG319900 Rh3DG300800 Rh3DG319200 Rh4AG199400 Rh4BG329100 Rh4BG329200 Rh4CG110800 Rh4DG042000 Rh4DG129400 Rh4DG187700 Rh4DG231900 Rh5AG038800 Rh5AG107300 Rh5AG303600 Rh5AG386500 Rh5AG454200 Rh5CG041800 Rh5CG534800 Rh5DG076400 Rh5DG109800 Rh5DG123600 Rh6AG164400 Rh6BG035100 Rh6BG036000 Rh6BG041000 Rh6BG215500 Rh6CG173900 Rh6CG174000 Rh6DG020300 Rh6DG166300 Rh6DG320000 Rh6DG509700 Rh7AG059500 Rh7AG291700 Rh7BG404300 Rh7DG402000
rosa_wichuraiana	Rw1G000890 Rw1G020020 Rw3G005730 Rw4G011330 Rw4G026960 Rw5G014010 Rw6G002230 Rw7G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	92, 196
AluI	AGCT	2 cut(s)	92, 196
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	242, 263
AoxI	GGCC	3 cut(s)	82, 114, 340
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	2 cut(s)	212, 275
BceAI	ACGGC	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	242, 263
BfaI	CTAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	3 cut(s)	73, 109, 347
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	242, 263
BsaJI	CCNNGG	2 cut(s)	111, 243
BsaWI	WCCGGW	3 cut(s)	38, 74, 186
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	111, 243
BseGI	GGATG	2 cut(s)	210, 223
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	84, 116, 342
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	7 cut(s)	39, 47, 68, 75, 187, 335, 343
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	242, 263
BsnI	GGCC	3 cut(s)	84, 116, 342
Bso31I	GGTCTC	2 cut(s)	242, 263
Bsp1286I	GDGCHC	2 cut(s)	63, 74
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	3 cut(s)	84, 116, 342
BspLI	GGNNCC	3 cut(s)	73, 109, 347
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	2 cut(s)	242, 263
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	111, 243
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	111, 243
BstF5I	GGATG	2 cut(s)	210, 223
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	242, 263
BstSCI	CCNGG	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	84, 116, 342
BtgI	CCRYGG	2 cut(s)	111, 243
BtsCI	GGATG	2 cut(s)	210, 223
BtsIMutI	CAGTG	1 cut(s)	8
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	340
CviAII	CATG	5 cut(s)	55, 137, 175, 226, 259
CviJI	RGCY	7 cut(s)	72, 84, 92, 116, 132, 196, 342
CviKI_1	RGCY	7 cut(s)	72, 84, 92, 116, 132, 196, 342
DinI	GGCGCC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	242, 263
EcoT38I	GRGCYC	1 cut(s)	74
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	5 cut(s)	58, 140, 178, 229, 262
FaiI	YATR	5 cut(s)	56, 138, 176, 227, 260
FatI	CATG	5 cut(s)	54, 136, 174, 225, 258
FokI	GGATG	2 cut(s)	217, 230
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	361
GlaI	GCGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	84, 116, 342
HapII	CCGG	7 cut(s)	39, 47, 68, 75, 187, 335, 343
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	58, 140, 178, 229, 262
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	7 cut(s)	39, 47, 68, 75, 187, 335, 343
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	58, 140, 178, 229, 262
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	52, 60, 78, 81, 88, 159, 200, 348, 356
MaeI	CTAG	1 cut(s)	361
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	63, 74
MluCI	AATT	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	95, 127, 143, 154, 208, 313, 331, 339
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	7 cut(s)	39, 47, 68, 75, 187, 335, 343
MspR9I	CCNGG	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	69
NlaIII	CATG	5 cut(s)	58, 140, 178, 229, 262
NlaIV	GGNNCC	3 cut(s)	73, 109, 347
PfeI	GAWTC	1 cut(s)	299
PluTI	GGCGCC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	73, 109, 347
PspPI	GGNCC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	63, 74
SetI	ASST	3 cut(s)	32, 94, 198
SfoI	GGCGCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	319
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	15
TspDTI	ATGAA	4 cut(s)	91, 163, 247, 312
TspGWI	ACGGA	3 cut(s)	36, 232, 338
TspRI	CASTG	1 cut(s)	15
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.