MD01G1168300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000608
Physical Location & Seq
Reverse (-)
27267871 .. 27270563
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1168300.v1.1.491

Sequence Viewer

Length: 321 bp
ATGAGTGTGCTGCCAACTTTTGCGTCTTGCGATTGCGATCGAGGATGGAACACGTCTCAACCTCTTGGGTTCTCGAACCTGAACACAAGGCTACTATTCTTACGAAGCTCACAAATCGTCGTCGTCGGATTCGGTCACAGTGATGGTATTCGTCATAGTAAACTCACTTCGAATCGACACCAAAGTCTAAGGGCACAAATACTCAAAGTGGATATATGTCTTAACAGTAAACGTGGTTCGACCGTTGGAATACCGAACTCTAAATCCTACTTGAGAGTATCCAATCATAAACTAACTCGGCGTGCAATGTGCCGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

11.17

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 51
AjiI CACGTC 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 196
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BccI CCATC 2 cut(s) 39, 137
BciVI GTATCC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 60
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 36
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 36
BseMI GCAATG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 196
Bsh1285I CGRYCG 2 cut(s) 40, 243
BsiEI CGRYCG 2 cut(s) 40, 243
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 312
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 3 cut(s) 140, 227, 244
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 37
BstMCI CGRYCG 2 cut(s) 40, 243
BstSLI GKGCMC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 289
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 303
CseI GACGC 1 cut(s) 12
CviJI RGCY 3 cut(s) 91, 108, 317
CviKI_1 RGCY 3 cut(s) 91, 108, 317
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 60
FaiI YATR 4 cut(s) 156, 215, 217, 288
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 11
HgaI GACGC 1 cut(s) 12
HinfI GANTC 2 cut(s) 129, 172
Hpy166II GTNNAC 2 cut(s) 161, 230
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 161, 230
Hpy99I CGWCG 3 cut(s) 122, 125, 128
HpyCH4III ACNGT 3 cut(s) 140, 227, 244
HpyCH4IV ACGT 2 cut(s) 53, 232
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 53, 232
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 92
MaeII ACGT 2 cut(s) 53, 232
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 106, 226
MnlI CCTC 2 cut(s) 35, 72
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 141
NdeII GATC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 170
PfeI GAWTC 2 cut(s) 129, 172
PkrI GCNGC 1 cut(s) 12
Ple19I CGATCG 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 220, 252
PvuI CGATCG 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 196
SetI ASST 5 cut(s) 56, 64, 81, 110, 235
SfuI TTCGAA 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 140, 227, 244
TaiI ACGT 2 cut(s) 56, 235
TaqI TCGA 5 cut(s) 40, 74, 170, 175, 239
TaqII GACCGA 1 cut(s) 122
TfiI GAWTC 2 cut(s) 129, 172
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 134
TspRI CASTG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.