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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 295 |
| AciI | CCGC | 4 cut(s) | 472, 530, 590, 759 |
| AcsI | RAATTY | 3 cut(s) | 25, 416, 853 |
| AfaI | GTAC | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 486, 529 |
| AgsI | TTSAA | 3 cut(s) | 354, 485, 843 |
| AjnI | CCWGG | 1 cut(s) | 372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| AoxI | GGCC | 1 cut(s) | 680 |
| ApoI | RAATTY | 3 cut(s) | 25, 416, 853 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 215, 247 |
| AspS9I | GGNCC | 2 cut(s) | 69, 752 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 412, 839 |
| AsuII | TTCGAA | 1 cut(s) | 414 |
| AvaII | GGWCC | 2 cut(s) | 69, 752 |
| BccI | CCATC | 2 cut(s) | 108, 691 |
| BceAI | ACGGC | 1 cut(s) | 743 |
| BciT130I | CCWGG | 1 cut(s) | 374 |
| BciVI | GTATCC | 1 cut(s) | 715 |
| BfaI | CTAG | 5 cut(s) | 59, 536, 687, 734, 883 |
| BfuI | GTATCC | 1 cut(s) | 715 |
| BisI | GCNGC | 3 cut(s) | 531, 591, 760 |
| BlsI | GCNGC | 3 cut(s) | 532, 592, 761 |
| Bme1390I | CCNGG | 1 cut(s) | 374 |
| Bme18I | GGWCC | 2 cut(s) | 69, 752 |
| BmgT120I | GGNCC | 2 cut(s) | 69, 752 |
| BmiI | GGNNCC | 2 cut(s) | 70, 753 |
| BmrFI | CCNGG | 1 cut(s) | 374 |
| BmsI | GCATC | 2 cut(s) | 133, 517 |
| Bpu14I | TTCGAA | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 1 cut(s) | 109 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 486, 529 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| BseBI | CCWGG | 1 cut(s) | 374 |
| BseDI | CCNNGG | 1 cut(s) | 109 |
| BseGI | GGATG | 2 cut(s) | 119, 803 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 486, 529 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BshFI | GGCC | 1 cut(s) | 682 |
| BslFI | GGGAC | 2 cut(s) | 765, 786 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 486, 529 |
| BsmFI | GGGAC | 2 cut(s) | 765, 786 |
| BsmI | GAATGC | 1 cut(s) | 230 |
| BsnI | GGCC | 1 cut(s) | 682 |
| Bsp119I | TTCGAA | 1 cut(s) | 414 |
| Bsp19I | CCATGG | 1 cut(s) | 109 |
| BspACI | CCGC | 4 cut(s) | 472, 530, 590, 759 |
| BspANI | GGCC | 1 cut(s) | 682 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspLI | GGNNCC | 2 cut(s) | 70, 753 |
| BspT104I | TTCGAA | 1 cut(s) | 414 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| BssECI | CCNNGG | 1 cut(s) | 109 |
| BssT1I | CCWWGG | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 374 |
| Bst6I | CTCTTC | 1 cut(s) | 511 |
| BstBI | TTCGAA | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 2 cut(s) | 470, 495 |
| BstDEI | CTNAG | 1 cut(s) | 333 |
| BstDSI | CCRYGG | 1 cut(s) | 109 |
| BstF5I | GGATG | 2 cut(s) | 119, 803 |
| BstNI | CCWGG | 1 cut(s) | 374 |
| BstSCI | CCNGG | 1 cut(s) | 372 |
| BsuI | GTATCC | 1 cut(s) | 715 |
| BsuRI | GGCC | 1 cut(s) | 682 |
| BtgI | CCRYGG | 1 cut(s) | 109 |
| BtgZI | GCGATG | 1 cut(s) | 110 |
| BtsCI | GGATG | 2 cut(s) | 119, 803 |
| Cac8I | GCNNGC | 2 cut(s) | 470, 495 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 2 cut(s) | 69, 752 |
| Csp6I | GTAC | 1 cut(s) | 475 |
| CviAII | CATG | 6 cut(s) | 83, 110, 170, 407, 623, 756 |
| CviJI | RGCY | 6 cut(s) | 58, 411, 468, 614, 682, 730 |
| CviKI_1 | RGCY | 6 cut(s) | 58, 411, 468, 614, 682, 730 |
| CviQI | GTAC | 1 cut(s) | 475 |
| DdeI | CTNAG | 1 cut(s) | 333 |
| DraI | TTTAAA | 2 cut(s) | 30, 394 |
| Eam1104I | CTCTTC | 1 cut(s) | 511 |
| EarI | CTCTTC | 1 cut(s) | 511 |
| Eco130I | CCWWGG | 1 cut(s) | 109 |
| Eco47I | GGWCC | 2 cut(s) | 69, 752 |
| EcoO109I | RGGNCCY | 1 cut(s) | 69 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| EcoRII | CCWGG | 1 cut(s) | 372 |
| EcoT14I | CCWWGG | 1 cut(s) | 109 |
| EcoT22I | ATGCAT | 1 cut(s) | 95 |
| ErhI | CCWWGG | 1 cut(s) | 109 |
| FaeI | CATG | 6 cut(s) | 86, 113, 173, 410, 626, 759 |
| FaqI | GGGAC | 2 cut(s) | 765, 786 |
| FatI | CATG | 6 cut(s) | 82, 109, 169, 406, 622, 755 |
| FauNDI | CATATG | 1 cut(s) | 89 |
| FblI | GTMKAC | 1 cut(s) | 295 |
| Fnu4HI | GCNGC | 3 cut(s) | 531, 591, 760 |
| FokI | GGATG | 2 cut(s) | 126, 810 |
| Fsp4HI | GCNGC | 3 cut(s) | 531, 591, 760 |
| FspBI | CTAG | 5 cut(s) | 59, 536, 687, 734, 883 |
| GluI | GCNGC | 3 cut(s) | 531, 591, 760 |
| HaeIII | GGCC | 1 cut(s) | 682 |
| Hin1II | CATG | 6 cut(s) | 86, 113, 173, 410, 626, 759 |
| HincII | GTYRAC | 1 cut(s) | 296 |
| HindII | GTYRAC | 1 cut(s) | 296 |
| HinfI | GANTC | 3 cut(s) | 357, 632, 830 |
| HphI | GGTGA | 3 cut(s) | 62, 412, 839 |
| Hpy166II | GTNNAC | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 3 cut(s) | 207, 336, 696 |
| Hpy188III | TCNNGA | 5 cut(s) | 354, 361, 687, 734, 863 |
| Hpy8I | GTNNAC | 1 cut(s) | 296 |
| HpyAV | CCTTC | 4 cut(s) | 82, 525, 529, 826 |
| HpyCH4IV | ACGT | 1 cut(s) | 378 |
| HpyCH4V | TGCA | 1 cut(s) | 93 |
| HpyF3I | CTNAG | 1 cut(s) | 333 |
| HpySE526I | ACGT | 1 cut(s) | 378 |
| Hsp92II | CATG | 6 cut(s) | 86, 113, 173, 410, 626, 759 |
| LmnI | GCTCC | 1 cut(s) | 453 |
| LpnPI | CCDG | 3 cut(s) | 33, 359, 386 |
| LweI | GCATC | 2 cut(s) | 133, 517 |
| MaeI | CTAG | 5 cut(s) | 59, 536, 687, 734, 883 |
| MaeII | ACGT | 1 cut(s) | 378 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MboII | GAAGA | 5 cut(s) | 498, 501, 660, 749, 831 |
| MluCI | AATT | 9 cut(s) | 25, 103, 135, 385, 416, 438, 563, 651, 853 |
| MlyI | GAGTC | 2 cut(s) | 351, 641 |
| MmeI | TCCRAC | 2 cut(s) | 450, 475 |
| MnlI | CCTC | 4 cut(s) | 59, 220, 310, 433 |
| Mph1103I | ATGCAT | 1 cut(s) | 95 |
| MseI | TTAA | 6 cut(s) | 29, 36, 197, 393, 441, 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 796 |
| MspR9I | CCNGG | 1 cut(s) | 374 |
| Mva1269I | GAATGC | 1 cut(s) | 230 |
| MvaI | CCWGG | 1 cut(s) | 374 |
| NcoI | CCATGG | 1 cut(s) | 109 |
| NdeI | CATATG | 1 cut(s) | 89 |
| NlaIII | CATG | 6 cut(s) | 86, 113, 173, 410, 626, 759 |
| NlaIV | GGNNCC | 2 cut(s) | 70, 753 |
| NsiI | ATGCAT | 1 cut(s) | 95 |
| NspV | TTCGAA | 1 cut(s) | 414 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 230 |
| PfeI | GAWTC | 1 cut(s) | 830 |
| PkrI | GCNGC | 3 cut(s) | 532, 592, 761 |
| PleI | GAGTC | 2 cut(s) | 351, 640 |
| PpsI | GAGTC | 2 cut(s) | 351, 640 |
| PpuMI | RGGWCCY | 1 cut(s) | 69 |
| Psp5II | RGGWCCY | 1 cut(s) | 69 |
| Psp6I | CCWGG | 1 cut(s) | 372 |
| PspGI | CCWGG | 1 cut(s) | 372 |
| PspN4I | GGNNCC | 2 cut(s) | 70, 753 |
| PspPI | GGNCC | 2 cut(s) | 69, 752 |
| PspPPI | RGGWCCY | 1 cut(s) | 69 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| RsaI | GTAC | 1 cut(s) | 476 |
| RsaNI | GTAC | 1 cut(s) | 475 |
| RseI | CAYNNNNRTG | 1 cut(s) | 796 |
| SalI | GTCGAC | 1 cut(s) | 294 |
| SaqAI | TTAA | 6 cut(s) | 29, 36, 197, 393, 441, 654 |
| SatI | GCNGC | 3 cut(s) | 531, 591, 760 |
| Sau96I | GGNCC | 2 cut(s) | 69, 752 |
| SchI | GAGTC | 2 cut(s) | 351, 641 |
| ScrFI | CCNGG | 1 cut(s) | 374 |
| SetI | ASST | 7 cut(s) | 194, 375, 381, 425, 551, 781, 829 |
| SfaNI | GCATC | 2 cut(s) | 133, 517 |
| SfuI | TTCGAA | 1 cut(s) | 414 |
| SinI | GGWCC | 2 cut(s) | 69, 752 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 796 |
| SmlI | CTYRAG | 1 cut(s) | 359 |
| SmoI | CTYRAG | 1 cut(s) | 359 |
| Sse9I | AATT | 9 cut(s) | 25, 103, 135, 385, 416, 438, 563, 651, 853 |
| SsiI | CCGC | 4 cut(s) | 472, 530, 590, 759 |
| SspMI | CTAG | 5 cut(s) | 59, 536, 687, 734, 883 |
| StyD4I | CCNGG | 1 cut(s) | 372 |
| StyI | CCWWGG | 1 cut(s) | 109 |
| TaiI | ACGT | 1 cut(s) | 381 |
| TaqI | TCGA | 3 cut(s) | 295, 414, 864 |
| TasI | AATT | 9 cut(s) | 25, 103, 135, 385, 416, 438, 563, 651, 853 |
| TauI | GCSGC | 3 cut(s) | 533, 593, 762 |
| TfiI | GAWTC | 1 cut(s) | 830 |
| Tru1I | TTAA | 6 cut(s) | 29, 36, 197, 393, 441, 654 |
| Tru9I | TTAA | 6 cut(s) | 29, 36, 197, 393, 441, 654 |
| TspDTI | ATGAA | 4 cut(s) | 177, 257, 265, 378 |
| VpaK11BI | GGWCC | 2 cut(s) | 69, 752 |
| XapI | RAATTY | 3 cut(s) | 25, 416, 853 |
| XbaI | TCTAGA | 2 cut(s) | 686, 733 |
| XmiI | GTMKAC | 1 cut(s) | 295 |
| XspI | CTAG | 5 cut(s) | 59, 536, 687, 734, 883 |
| Zsp2I | ATGCAT | 1 cut(s) | 95 |